Browse Element(s) Details


Os.18951.1.S1_at

Description gb:AK072130.1
DB_XREF= gi:32982153
TID=Os.18951.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686C03.25 (P0686C03.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127L10, full insert sequence.
FL= gb:AK072130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4045011/11UvrB/uvrC motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40410Os.5392.1.S1_at11/118+25442277..25444214ACT domain-containing protein, putative
LOC_Os08g40420Os.9673.1.S1_at11/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40420Os.28438.3.S1_at10/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40430Os.15707.1.S1_at11/118+25456144..25457751mitochondrial transcription termination factor, putative, expressed
LOC_Os08g40440OsAffx.17435.1.S1_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40440OsAffx.17435.1.S1_s_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40450Os.18951.1.S1_at11/118+25460280..25464101UvrB/uvrC motif family protein, expressed
LOC_Os08g40460OsAffx.29609.2.S1_x_at11/118+25466936..25468292BTB/POZ domain containing protein
LOC_Os08g40470OsAffx.20858.3.S1_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.4.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.3.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.1.S1_x_at7/118+25470175..25474196hypothetical protein
LOC_Os08g40480Os.11575.4.S1_x_at11/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40480Os.11575.3.S1_x_at9/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40490OsAffx.21997.2.S1_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40490OsAffx.21997.3.S1_x_at11/118+25477503..25483169BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18951.1.S1_at--832--1411Chr08:25460850..25460874 (25 bp)
AGAAATTGCGTCTTCTTTCGGTCTA
LOC_Os08g40450
Os.18951.1.S1_at--116--591Chr08:25460793..25460817 (25 bp)
ATGCCACCATGCTTGTTACAGTTTG
LOC_Os08g40450
Os.18951.1.S1_at--1003--10791Chr08:25460771..25460795 (25 bp)
TTGTAGAGTTTTGCCAGCGACAGCT
LOC_Os08g40450
Os.18951.1.S1_at--613--1651Chr08:25460756..25460780 (25 bp)
AGCGACAGCTGCCTATTGAAGGGAA
LOC_Os08g40450
Os.18951.1.S1_at--80--2891Chr08:25460738..25460762 (25 bp)
AAGGGAACATCTGTGCTGCAATCAA
LOC_Os08g40450
Os.18951.1.S1_at--949--5631Chr08:25460621..25460645 (25 bp)
GACAGCCAAGTGTATAACATCCATT
LOC_Os08g40450
Os.18951.1.S1_at--350--351Chr08:25460450..25460474 (25 bp)
ATAAACTCTCTTCTGCATTGCACAA
LOC_Os08g40450
Os.18951.1.S1_at--15--2211Chr08:25460429..25460453 (25 bp)
ACAACTAGTCACATCGAGTCATCGA
LOC_Os08g40450
Os.18951.1.S1_at--480--8671Chr08:25460337..25460361 (25 bp)
TGTGAACCTCACAGGCCGTTGTGAA
LOC_Os08g40450
Os.18951.1.S1_at--975--8411Chr08:25460324..25460348 (25 bp)
GGCCGTTGTGAAATCTATCCTACTC
LOC_Os08g40450
Os.18951.1.S1_at--7--4311Chr08:25460306..25460330 (25 bp)
CCTACTCTCTACCTGCCAAATATAA
LOC_Os08g40450
Target Sequence 
AGAAATTGCGTCTTCTTTCGGTCTATCCCCCTAGAAGCAAACTTCGACAGTACTTGNCATGCCACCATGCTTGTTACAGT
TTGTAGAGTTTTGCCAGCGACAGCTGCCTATTGAAGGGAACATCTGTGCTGCAATCAAAGCTTATCTCCAGATATACATG
TCTTCCTCATTGTTCCTCCTTACCTCCTAGCATTTGGGATCTACTCTAAATCGAGGAGAGGTTCCTAGGGGACAGCCAAG
TGTATAACATCCATTTTGCNTACTCAAACTCTTCAGGGAGTTTGTCTCCCCCTCATTTTTGTGTACATTAAGACTGTAAT
TCTTTTGTTGTTGTGGTAATTTTGGTTGAGCTACAGTAAATGCCATTCATCCGAATGTAATCAGTATAAGTTATCCATGA
AATAAACTCTCTTCTGCATTGCACAACTAGTCACATCGAGTCATCGAGTATGTGTTGAAAGTTAGTCCTAGCTAAGAACT
GTTTTATAGAGTTGTTGCTTCAGCATGAAGAAGCTGTGAACCTCACAGGCCGTTGTGAAATCTATCCTACTCTCTACCTG
CCAAATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis