Browse Element(s) Details

Os.5392.1.S1_at

Description

gb:NM_188993.1
DB_XREF= gi:34905069
GEN=P0686C03.18
TID=Os.5392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686C03.18 (P0686C03.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0686C03.18 (P0686C03.18), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g40410	11/11	ACT domain-containing protein, putative
LOC_Os02g49690	9/11	expressed protein
LOC_Os08g02500	1/11	ACT domain-containing protein, putative

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g40360	OsAffx.9815.1.S1_at	11/11	8	+	25418494..25424508	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g40370	NA	NA	8	+	25425286..25430466	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40380	OsAffx.17432.1.S1_at	11/11	8	+	25431600..25432598	Sulfotransferase domain containing protein, expressed
LOC_Os08g40380	OsAffx.29608.1.S1_s_at	1/11	8	+	25431600..25432598	Sulfotransferase domain containing protein, expressed
LOC_Os08g40390	OsAffx.29608.4.S1_at	11/11	8	+	25434000..25434975	Sulfotransferase domain containing protein
LOC_Os08g40390	OsAffx.29608.1.S1_s_at	11/11	8	+	25434000..25434975	Sulfotransferase domain containing protein
LOC_Os08g40390	OsAffx.29608.2.S1_s_at	1/11	8	+	25434000..25434975	Sulfotransferase domain containing protein
LOC_Os08g40410	Os.5392.1.S1_at	11/11	8	+	25442277..25444214	ACT domain-containing protein, putative
LOC_Os08g40420	Os.9673.1.S1_at	11/11	8	+	25452147..25456481	ternary complex factor MIP1, putative, expressed
LOC_Os08g40420	Os.28438.3.S1_at	10/11	8	+	25452147..25456481	ternary complex factor MIP1, putative, expressed
LOC_Os08g40430	Os.15707.1.S1_at	11/11	8	+	25456144..25457751	mitochondrial transcription termination factor, putative, expressed
LOC_Os08g40440	OsAffx.17435.1.S1_at	11/11	8	+	25458574..25460173	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40440	OsAffx.17435.1.S1_s_at	11/11	8	+	25458574..25460173	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40450	Os.18951.1.S1_at	11/11	8	+	25460280..25464101	UvrB/uvrC motif family protein, expressed
LOC_Os08g40460	OsAffx.29609.2.S1_x_at	11/11	8	+	25466936..25468292	BTB/POZ domain containing protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006521	biological_process	regulation of amino acid metabolism
GO:0009735	biological_process	response to cytokinin stimulus
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0005829	cellular_component	cytosol
GO:0016597	molecular_function	amino acid binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5392.1.S1_at--494--723	2	Chr02:30359201..30359421 (25 bp)	GTCGCTCGCGCCATCTGGTCGGATG	LOC_Os02g49690
Os.5392.1.S1_at--459--803	1	Chr08:25442661..25442685 (25 bp)	GGAGGTGGTTCATTCGTTCATGGAC	LOC_Os08g40410
Os.5392.1.S1_at--212--1055	1	Chr08:25442653..25442677 (25 bp)	TTCATTCGTTCATGGACGTCTTCCA	LOC_Os08g40410
Os.5392.1.S1_at--246--355	3	Chr02:30359310..30359334 (25 bp)	CATCGAGCAGGTTGGTGGGTTTTCT	LOC_Os02g49690
Os.5392.1.S1_at--213--859	2	Chr02:30359338..30359362 (25 bp)	TGGTTTCTTGATTCTGGCACGAGTG	LOC_Os02g49690
Os.5392.1.S1_at--827--657	2	Chr02:30359347..30359371 (25 bp)	GATTCTGGCACGAGTGTTCGACGGA	LOC_Os02g49690
Os.5392.1.S1_at--1102--945	2	Chr02:30359350..30359374 (25 bp)	TCTGGCACGAGTGTTCGACGGAGTT	LOC_Os02g49690
Os.5392.1.S1_at--536--193	2	Chr02:30359367..30359391 (25 bp)	ACGGAGTTGGGATTTTCTGATGGCA	LOC_Os02g49690
Os.5392.1.S1_at--439--1031	2	Chr02:30359380..30359404 (25 bp)	TTTCTGATGGCATACATGGCTTCTT	LOC_Os02g49690
Os.5392.1.S1_at--855--33	2	Chr02:30359391..30359415 (25 bp)	ATACATGGCTTCTTTGCAGTCTCTG	LOC_Os02g49690
Os.5392.1.S1_at--30--213	2	Chr02:30359393..30359417 (25 bp)	ACATGGCTTCTTTGCAGTCTCTGGG	LOC_Os02g49690

Target Sequence

GTCGCTCGCGCCATCTGGTCGGATGGGAGGTGGTTCATTCGTTCATGGACGTCTTCCATGTCACCGACCGCCTCGGTTGC
AAGCTCACCAACGACAGCGTCATCACCTACATCGAGCAGGTTGGTGGGTTTTCTTGGTGGTTTCTTGATTCTGGCACGAG
TGTTCGACGGAGTTGGGATTTTCTGATGGCATACATGGCTTCTTTGCAGTCTCTGGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis