Browse Element(s) Details


Os.28438.3.S1_at

Description gb:AK062941.1
DB_XREF= gi:32972959
TID=Os.28438.3
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 33kDa oxygen evolvingprotein of photosystem II (B1080D07.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-B10, full insert sequence.
FL= gb:AK062941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4042010/11ternary complex factor MIP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40370NANA8+25425286..25430466retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40380OsAffx.17432.1.S1_at11/118+25431600..25432598Sulfotransferase domain containing protein, expressed
LOC_Os08g40380OsAffx.29608.1.S1_s_at1/118+25431600..25432598Sulfotransferase domain containing protein, expressed
LOC_Os08g40390OsAffx.29608.4.S1_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.1.S1_s_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.2.S1_s_at1/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40410Os.5392.1.S1_at11/118+25442277..25444214ACT domain-containing protein, putative
LOC_Os08g40420Os.9673.1.S1_at11/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40420Os.28438.3.S1_at10/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40430Os.15707.1.S1_at11/118+25456144..25457751mitochondrial transcription termination factor, putative, expressed
LOC_Os08g40440OsAffx.17435.1.S1_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40440OsAffx.17435.1.S1_s_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40450Os.18951.1.S1_at11/118+25460280..25464101UvrB/uvrC motif family protein, expressed
LOC_Os08g40460OsAffx.29609.2.S1_x_at11/118+25466936..25468292BTB/POZ domain containing protein
LOC_Os08g40470OsAffx.20858.3.S1_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.4.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.3.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.1.S1_x_at7/118+25470175..25474196hypothetical protein
LOC_Os08g40480Os.11575.4.S1_x_at11/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40480Os.11575.3.S1_x_at9/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40490OsAffx.21997.2.S1_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40490OsAffx.21997.3.S1_x_at11/118+25477503..25483169BTB/POZ domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28438.3.S1_at--828--4471NONE
GCCGGCAAGTACAACTCACTTGGGC
NONE
Os.28438.3.S1_at--869--1171Chr08:25456107..25456130 (24 bp)
AGTACAACTCACTTGGGCATTTCAA
LOC_Os08g40420
Os.28438.3.S1_at--530--10551Chr08:25456157..25456181 (25 bp)
TTCATATGCTTTGCATTGCTTTCTC
LOC_Os08g40420
Os.28438.3.S1_at--63--3611Chr08:25456170..25456194 (25 bp)
CATTGCTTTCTCTTCTGCGAATTGA
LOC_Os08g40420
Os.28438.3.S1_at--365--4891Chr08:25456174..25456198 (25 bp)
GCTTTCTCTTCTGCGAATTGATGCA
LOC_Os08g40420
Os.28438.3.S1_at--531--9151Chr08:25456185..25456209 (25 bp)
TGCGAATTGATGCAAGGTTATACAT
LOC_Os08g40420
Os.28438.3.S1_at--892--7871Chr08:25456200..25456224 (25 bp)
GGTTATACATTAATCATGACACTGA
LOC_Os08g40420
Os.28438.3.S1_at--112--131Chr08:25456208..25456232 (25 bp)
ATTAATCATGACACTGAAAGAGGCA
LOC_Os08g40420
Os.28438.3.S1_at--488--6191Chr08:25456227..25456251 (25 bp)
GAGGCAAATTTGCACTTGACATTCC
LOC_Os08g40420
Os.28438.3.S1_at--843--2251Chr08:25456232..25456256 (25 bp)
AAATTTGCACTTGACATTCCAGAAA
LOC_Os08g40420
Os.28438.3.S1_at--828--5671Chr08:25456244..25456268 (25 bp)
GACATTCCAGAAAACACCCAGTAAA
LOC_Os08g40420
Target Sequence 
GCCGGCAAGTACAACTCACTTGGGCATTTCAACTGAGAAGAGCATGCCGACAAGAAAATTCATATGCTTTGCATTGCTTT
CTCTTCTGCGAATTGATGCAAGGTTATACATTAATCATGACACTGAAAGAGGCAAATTTGCACTTGACATTCCAGAAAAC
ACCCAGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28438.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis