Browse Element(s) Details


Os.15707.1.S1_at

Description gb:AK061787.1
DB_XREF= gi:32971805
TID=Os.15707.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686C03.23 (P0686C03.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E10, full insert sequence.
FL= gb:AK061787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4043011/11mitochondrial transcription termination factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40380OsAffx.17432.1.S1_at11/118+25431600..25432598Sulfotransferase domain containing protein, expressed
LOC_Os08g40380OsAffx.29608.1.S1_s_at1/118+25431600..25432598Sulfotransferase domain containing protein, expressed
LOC_Os08g40390OsAffx.29608.4.S1_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.1.S1_s_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.2.S1_s_at1/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40410Os.5392.1.S1_at11/118+25442277..25444214ACT domain-containing protein, putative
LOC_Os08g40420Os.9673.1.S1_at11/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40420Os.28438.3.S1_at10/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40430Os.15707.1.S1_at11/118+25456144..25457751mitochondrial transcription termination factor, putative, expressed
LOC_Os08g40440OsAffx.17435.1.S1_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40440OsAffx.17435.1.S1_s_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40450Os.18951.1.S1_at11/118+25460280..25464101UvrB/uvrC motif family protein, expressed
LOC_Os08g40460OsAffx.29609.2.S1_x_at11/118+25466936..25468292BTB/POZ domain containing protein
LOC_Os08g40470OsAffx.20858.3.S1_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.4.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.3.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.1.S1_x_at7/118+25470175..25474196hypothetical protein
LOC_Os08g40480Os.11575.4.S1_x_at11/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40480Os.11575.3.S1_x_at9/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40490OsAffx.21997.2.S1_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40490OsAffx.21997.3.S1_x_at11/118+25477503..25483169BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15707.1.S1_at--575--7211Chr08:25456684..25456708 (25 bp)
GTCGATAAGATTCTGCGGCCCAATT
LOC_Os08g40430
Os.15707.1.S1_at--84--4691Chr08:25456641..25456665 (25 bp)
GCGGTTTCAGCAAGGATCAGGTCAT
LOC_Os08g40430
Os.15707.1.S1_at--1087--3491Chr08:25456619..25456643 (25 bp)
CATGGCATTGGTGGCTGGATACCCT
LOC_Os08g40430
Os.15707.1.S1_at--908--311Chr08:25456601..25456625 (25 bp)
ATACCCTCCTGTTCTCATCAAGAGT
LOC_Os08g40430
Os.15707.1.S1_at--36--6131Chr08:25456580..25456604 (25 bp)
GAGTGTCAAGCATTGCCTGGAGCCT
LOC_Os08g40430
Os.15707.1.S1_at--295--1231Chr08:25456494..25456518 (25 bp)
AGTTCTTTCGCCATGGTCTCAAGAG
LOC_Os08g40430
Os.15707.1.S1_at--52--1531Chr08:25456358..25456382 (25 bp)
AGCAGTTTAGGCATGCATCCTCTCT
LOC_Os08g40430
Os.15707.1.S1_at--1021--3751Chr08:25456337..25456361 (25 bp)
CTCTTCAGTTCCCATGTAGCATGTT
LOC_Os08g40430
Os.15707.1.S1_at--984--4931Chr08:25456253..25456277 (25 bp)
GCATTTTGCTTTACTGGGTGTTTTC
LOC_Os08g40430
Os.15707.1.S1_at--722--2251Chr08:25456213..25456237 (25 bp)
AAATTTGCCTCTTTCAGTGTCATGA
LOC_Os08g40430
Os.15707.1.S1_at--714--6891Chr08:25456183..25456207 (25 bp)
GTATAACCTTGCATCAATTCGCAGA
LOC_Os08g40430
Target Sequence 
GTCGATAAGATTCTGCGGCCCAATTTGGCGTTCTTACAGAGCTGCGGTTTCAGCAAGGATCAGGTCATGGCATTGGTGGC
TGGATACCCTCCTGTTCTCATCAAGAGTGTCAAGCATTGCCTGGAGCCTAGGATGAAGTTCCTTGTTGAAGAAATGGGGC
GGGACATGGGTGAGGTGGTGGATTACCCCCAGTTCTTTCGCCATGGTCTCAAGAGGAGCCTGGAGTACCGCCACAAGGTG
CTCAAGCAGATGAATTCAAGGTGCAGCCTCAGTGAGATGCTTGACTGTAATCAGAAGAAGTTTGCCATGAAATTTGGTTT
GCTTGCAGCAGTTTAGGCATGCATCCTCTCTTCAGTTCCCATGTAGCATGTTTATTTTTCAGGTGAAAGTTTTTCCTTTT
GTACTAGCATTTTGGACATCGAGAATTCAAAGCATTTTGCTTTACTGGGTGTTTTCTGGAATGTCAAGTGCAAATTTGCC
TCTTTCAGTGTCATGATTAATGTATAACCTTGCATCAATTCGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis