Browse Element(s) Details


OsAffx.21997.2.S1_at

Description gb:NM_189007.1
DB_XREF= gi:34905097
GEN=P0686C03.32
TID=OsAffx.21997.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0686C03.32 (P0686C03.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4049011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40420Os.9673.1.S1_at11/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40420Os.28438.3.S1_at10/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40430Os.15707.1.S1_at11/118+25456144..25457751mitochondrial transcription termination factor, putative, expressed
LOC_Os08g40440OsAffx.17435.1.S1_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40440OsAffx.17435.1.S1_s_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40450Os.18951.1.S1_at11/118+25460280..25464101UvrB/uvrC motif family protein, expressed
LOC_Os08g40460OsAffx.29609.2.S1_x_at11/118+25466936..25468292BTB/POZ domain containing protein
LOC_Os08g40470OsAffx.20858.3.S1_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.4.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.3.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.1.S1_x_at7/118+25470175..25474196hypothetical protein
LOC_Os08g40480Os.11575.4.S1_x_at11/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40480Os.11575.3.S1_x_at9/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40490OsAffx.21997.2.S1_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40490OsAffx.21997.3.S1_x_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40500Os.55699.1.S1_at10/118+25495911..25496794expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21997.2.S1_at--933--51Chr08:25478846..25478870 (25 bp)
ATTGCGGATGCACTCAGAAGCTATG
LOC_Os08g40490
OsAffx.21997.2.S1_at--58--4111Chr08:25478900..25478924 (25 bp)
CGACTCTGGCTTGCGCGGAGATGCA
LOC_Os08g40490
OsAffx.21997.2.S1_at--223--6331Chr08:25478919..25478943 (25 bp)
GATGCACAGCTGCACGGAGCTCAAA
LOC_Os08g40490
OsAffx.21997.2.S1_at--4--4771Chr08:25478927..25478951 (25 bp)
GCTGCACGGAGCTCAAAACTAGATG
LOC_Os08g40490
OsAffx.21997.2.S1_at--587--2391Chr08:25478942..25478966 (25 bp)
AAACTAGATGCATCGACTTCCTCAT
LOC_Os08g40490
OsAffx.21997.2.S1_at--266--5691Chr08:25478956..25478980 (25 bp)
GACTTCCTCATGAAGGACAGCAACT
LOC_Os08g40490
OsAffx.21997.2.S1_at--431--5291Chr08:25478985..25479009 (25 bp)
GAAGGCAGCGGTGACAGATGACTAC
LOC_Os08g40490
OsAffx.21997.2.S1_at--129--1311Chr08:25479000..25479024 (25 bp)
AGATGACTACCTGCATCTTTATGCA
LOC_Os08g40490
OsAffx.21997.2.S1_at--209--5051Chr08:25479022..25479046 (25 bp)
GCAGAGCTTCCCGTTAGTGATCAAC
LOC_Os08g40490
OsAffx.21997.2.S1_at--514--6031Chr08:25479047..25479071 (25 bp)
GAGATAAAGGCACGGCTCCAGGCTT
LOC_Os08g40490
OsAffx.21997.2.S1_at--10--1951Chr08:25479058..25479082 (25 bp)
ACGGCTCCAGGCTTGAGACTTGAAA
LOC_Os08g40490
Target Sequence 
ATTGCGGATGCACTCAGAAGCTATGGGAGATCGTGTCGGCGGAGACCGTCGCGGCGACTCTGGCTTGCGCGGAGATGCAC
AGCTGCACGGAGCTCAAAACTAGATGCATCGACTTCCTCATGAAGGACAGCAACTTCAAGAAGGCAGCGGTGACAGATGA
CTACCTGCATCTTTATGCAGAGCTTCCCGTTAGTGATCAACGAGATAAAGGCACGGCTCCAGGCTTGAGACTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21997.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis