Browse Element(s) Details


Os.55699.1.S1_at

Description gb:AK108596.1
DB_XREF= gi:32993805
TID=Os.55699.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E01, full insert sequence.
FL= gb:AK108596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4050010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40470OsAffx.20858.3.S1_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.4.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.3.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.1.S1_x_at7/118+25470175..25474196hypothetical protein
LOC_Os08g40480Os.11575.4.S1_x_at11/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40480Os.11575.3.S1_x_at9/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40490OsAffx.21997.2.S1_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40490OsAffx.21997.3.S1_x_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40500Os.55699.1.S1_at10/118+25495911..25496794expressed protein
LOC_Os08g40510Os.11481.1.S1_s_at11/118+25510771..25512440expressed protein
LOC_Os08g40520Os.43185.1.S1_at11/118+25516041..25518798expressed protein
LOC_Os08g40530Os.10351.2.S1_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40530Os.10351.1.S1_a_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55699.1.S1_at--154--5811Chr08:25496382..25496406 (25 bp)
GACGCTGGTGTTCTTCCCCGTGCAG
LOC_Os08g40500
Os.55699.1.S1_at--792--3931Chr08:25496304..25496328 (25 bp)
CGGCTGATGATGATCTCTACCCACC
LOC_Os08g40500
Os.55699.1.S1_at--749--3951Chr08:25496260..25496284 (25 bp)
CGGAGCAGCACAATTGGGCGTAAAT
LOC_Os08g40500
Os.55699.1.S1_at--507--9211Chr08:25496211..25496235 (25 bp)
TCCACTTCCTCGGTGAATTCTTGGA
LOC_Os08g40500
Os.55699.1.S1_at--443--3151Chr08:25496196..25496220 (25 bp)
AATTCTTGGAGTTCTTGTGATCTTC
LOC_Os08g40500
Os.55699.1.S1_at--219--1232Chr07:11033769..11033984 (25 bp)
AGTTCTTGTGATCTTCTCTTCCTTC
NONE
Os.55699.1.S1_at--804--9511Chr08:25496135..25496159 (25 bp)
TCTCTCCTCTGGTTCTTGCATGGTT
LOC_Os08g40500
Os.55699.1.S1_at--292--7871Chr08:25496114..25496138 (25 bp)
GGTTCCCACGGCCATGGTATAATTA
LOC_Os08g40500
Os.55699.1.S1_at--220--5531Chr08:25495957..25495981 (25 bp)
GAAATTCCCGGAGATCTTGTTAATT
LOC_Os08g40500
Os.55699.1.S1_at--504--6891Chr08:25495923..25495947 (25 bp)
GTATAGTTAAATTCACAGCTCTAAG
LOC_Os08g40500
Os.55699.1.S1_at--348--9691Chr08:25495911..25495935 (25 bp)
TCACAGCTCTAAGATTTACATGCTC
NONE
Target Sequence 
GACGCTGGTGTTCTTCCCCGTGCAGCGCGACCTCGCCGCCGTGTTCCGGTCGCTGCCGCCCAAGAAGCGGATCCGCGCCG
GCTGATGATGATCTCTACCCACCCACACATCGCCGCCGCCGCCGGAGCAGCACAATTGGGCGTAAATTATGGGGCTCCAT
GGTTCGATCCATCCACTTCCTCGGTGAATTCTTGGAGTTCTTGTGATCTTCTCTTCCTTCTCTGCCACTTTTTTTTCTTC
CTCTCTCTCTCTCCTCTGGTTCTTGCATGGTTCCCACGGCCATGGTATAATTAATTTCTGGTGCAAATAATGTGTTGTTT
TTTTTAGTTCTTTTTTCTTCTTTTTTTAGAAGGCTTGTGTGAAGAAGAAACTGTAGAATTATTTATAGGTGAAATGGGGA
AAAAAAGGAGAAAGGAGTTGTAAGAGAAATTCCCGGAGATCTTGTTAATTATTTATTAAGTATAGTTAAATTCACAGCTC
TAAGATTTACATGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis