Browse Element(s) Details


Os.11481.1.S1_s_at

Description gb:AA753851
DB_XREF= gi:2800557
DB_XREF=97BS0284
CLONE=97BS0284
TID=Os.11481.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686C03.43 (P0686C03.43), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4051011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40500Os.55699.1.S1_at10/118+25495911..25496794expressed protein
LOC_Os08g40510Os.11481.1.S1_s_at11/118+25510771..25512440expressed protein
LOC_Os08g40520Os.43185.1.S1_at11/118+25516041..25518798expressed protein
LOC_Os08g40530Os.10351.2.S1_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40530Os.10351.1.S1_a_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40540OsAffx.6095.1.S1_s_at11/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540OsAffx.6095.1.S1_at9/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540Os.15831.4.S1_x_at1/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40550Os.45957.4.S1_x_at11/118+25535896..25540697retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11481.1.S1_s_at--1077--4471Chr08:25511883..25511907 (25 bp)
GCCGGCAAGTCCAAGTCGTTCACGA
LOC_Os08g40510
Os.11481.1.S1_s_at--700--2851Chr08:25511895..25511919 (25 bp)
AAGTCGTTCACGAGCCTGGCCGAGG
LOC_Os08g40510
Os.11481.1.S1_s_at--923--3411Chr08:25512189..25512213 (25 bp)
CAGAAGAGCAGCTTGACGCCGAGGA
LOC_Os08g40510
Os.11481.1.S1_s_at--56--5251Chr08:25512218..25512242 (25 bp)
GAATCCGGCGTCGTCGTTTAGATCT
LOC_Os08g40510
Os.11481.1.S1_s_at--1092--10031Chr08:25512236..25512260 (25 bp)
TAGATCTCCTAGGTCATTCTCACTA
LOC_Os08g40510
Os.11481.1.S1_s_at--954--10571Chr08:25512252..25512276 (25 bp)
TTCTCACTATCCGATCTCCAAAATG
LOC_Os08g40510
Os.11481.1.S1_s_at--772--6411Chr08:25512264..25512288 (25 bp)
GATCTCCAAAATGCAGGCTCCTATA
LOC_Os08g40510
Os.11481.1.S1_s_at--505--5011Chr08:25512276..25512300 (25 bp)
GCAGGCTCCTATAACTAGCTCAAGA
LOC_Os08g40510
Os.11481.1.S1_s_at--575--2271Chr08:25512306..25512330 (25 bp)
AAATCTAGGTTTCTGCTTCTTCTCT
LOC_Os08g40510
Os.11481.1.S1_s_at--27--10612Chr08:25512316..25512340 (25 bp)
TTCTGCTTCTTCTCTTGTCTGAAAA
LOC_Os08g40510
Os.11481.1.S1_s_at--625--4771Chr08:25512384..25512408 (25 bp)
GCTGCTGCTGCTATATGATCAAGAT
LOC_Os08g40510
Target Sequence 
GCCGGCAAGTCCAAGTCGTTCACGAGCCTGGCCGAGGCGGCGGCGAAGGCGGCGGCGAAGGAGATCNCCAAGCCNGGAGA
ACCCGTTCAACAAGCNCCNCCGCGTCCTCNCCGCGTGNTCGCGNCGGCGCGCGTCCTGCAGCTCGCTGGCCACCACCTAC
CTGCCCCCTCTCCTCGCCCCCGACCACGCCGTCGTCGAGGAGGAGGACGAGGAGGACGACTCCGACGCCGAGCAGTGCAG
CGGCAGCGGCGGCGGCAACCGCCGGCGCGAGCCGACGTTCCCGCCGCCGAGGCTGAGCCTGCACGCGCAGAAGAGCAGCT
TGACGCCGAGGAGCTCGAATCCGGCGTCGTCGTTTAGATCTCCTAGGTCATTCTCACTATCCGATCTCCAAAATGCAGGC
TCCTATAACTAGCTCAAGAAAAAAAAATCTAGGTTTCTGCTTCTTCTCTTGTCTGAAAATTTTAGGGGTGTGAGAGAAAT
CATCAGTGTTGTTGTTACTGCTGCTGCTGCTGCTATATGATCAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11481.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis