Browse Element(s) Details


Os.57155.1.S1_at

Description gb:AK111038.1
DB_XREF= gi:32996247
TID=Os.57155.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-A10, full insert sequence.
FL= gb:AK111038.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g410803/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41020NANA8+25810938..25815327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g41030Os.55500.1.S1_at11/118+25817415..25818314AP2 domain containing protein, expressed
LOC_Os08g41040Os.17091.1.S1_at11/118+25820114..25821925expressed protein
LOC_Os08g41054OsAffx.17446.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_x_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41070OsAffx.28903.2.S1_x_at11/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.2.S1_at10/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.1.S1_x_at7/118+25826008..25833843expressed protein
LOC_Os08g41070Os.50232.1.S1_x_at1/118+25826008..25833843expressed protein
LOC_Os08g41080Os.57155.1.S1_at3/118+25838216..25838446expressed protein
LOC_Os08g41090Os.17125.1.S1_at11/118+25838921..25842038Peroxidase family protein, expressed
LOC_Os08g41100Os.9173.1.S1_at11/118+25842624..25844598Chitinase class I family protein, expressed
LOC_Os08g41110Os.17116.1.S1_at11/118+25846641..25851174Chaperone protein dnaJ 10, putative, expressed
LOC_Os08g41120NANA8+25851411..25852436BTB/POZ domain containing protein
LOC_Os08g41130NANA8+25855367..25858078transposon protein, putative, Mutator sub-class
LOC_Os08g41140OsAffx.22940.2.S1_s_at11/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.1.S1_s_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_x_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.3.S1_x_at9/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.3.S1_x_at8/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.18.S1_x_at6/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.31552.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.2.S1_at1/118+25858437..25862921hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57155.1.S1_at--79--4051Chr08:25838121..25838145 (25 bp)
CGATAATAATCCTATCGGCGGCGGC
NONE
Os.57155.1.S1_at--358--2711Chr08:25838164..25838188 (25 bp)
AAGCAGCATATATACCTTCGGTTTC
NONE
Os.57155.1.S1_at--879--9411Chr08:25838181..25838205 (25 bp)
TCGGTTTCGTAATTTTTCTCTCTTG
NONE
Os.57155.1.S1_at--89--9751Chr08:25838190..25838214 (25 bp)
TAATTTTTCTCTCTTGTTCGTTCTC
NONE
Os.57155.1.S1_at--223--871Chr08:25838216..25838240 (25 bp)
ATGGCGGCGAATTTCGTCTGCTTCT
NONE
Os.57155.1.S1_at--800--4251Chr08:25838244..25838268 (25 bp)
CCGGCTTGTGCATCGGCATATCGAT
LOC_Os08g41080
Os.57155.1.S1_at--926--4931Chr08:25838259..25838283 (25 bp)
GCATATCGATCCAGGCGAACGACGA
LOC_Os08g41080
Os.57155.1.S1_at--1103--2671Chr08:25838408..25838432 (25 bp)
AAGCTCGACCAGATCGTCCAGATCC
LOC_Os08g41080
Os.57155.1.S1_at--1117--931Chr08:25838435..25838459 (25 bp)
AGGAATCTGTGACCGGATAGCCGCC
NONE
Os.57155.1.S1_at--293--1973Chr08:25838521..25838545 (25 bp)
ACTGTACTAGATTATTACTCCCTCC
NONE
Os.57155.1.S1_at--743--8914Chr08:25838588..25838612 (25 bp)
TGACCACTCGTCTTAGTTATATTTT
NONE
Target Sequence 
CGATAATAATCCTATCGGCGGCGGCGGCGATCACCGACCGGCCAAGCAGCATATATACCTTCGGTTTCGTAATTTTTCTC
TCTTGTTCGTTCTCCATGGCGGCGAATTTCGTCTGCTTCTTCGCCGGCTTGTGCATCGGCATATCGATCCAGGCGAACGA
CGAAGAGCAGCAGCGGCGGCGGCGCCTCGTCGAGCTGGAGCGGCGCGGCGAGGAGCGGGAGAAGCAGGTCGCCGAGATGG
TGAGCCGGGAGGAGGATCGCGAGCGGGAGCGGAAGAAGAACCTGGACAAGCTCGACCAGATCGTCCAGATCCTCAGGAAT
CTGTGACCGGATAGCCGCCGGCCGCCGTGGAGACGAGGCTCGCCGGAGCTAGGAGAGATGACAATAACAGTGTTATTACT
ACTGTACTAGATTATTACTCCCTCCGTCCCACAGTATAAGGAATTTTGAGTTTTTGCTTGCAACGTTTGACCACTCGTCT
TAGTTATATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis