Browse Element(s) Details


Os.50232.1.S1_x_at

Description gb:AK070196.1
DB_XREF= gi:32980220
TID=Os.50232.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041N13, full insert sequence.
FL= gb:AK070196.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2052011/11AT hook motif-containing protein, putative
LOC_Os07g100706/11hypothetical protein
LOC_Os08g410701/11expressed protein
LOC_Os07g446701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20480OsAffx.29288.1.S1_at10/118+12278656..12286661F-box domain containing protein
LOC_Os08g20486OsAffx.5882.1.S1_at11/118+12286994..12293822transposon protein, putative, unclassified, expressed
LOC_Os08g20492OsAffx.29288.2.S1_at10/118+12297813..12300143F-box domain containing protein
LOC_Os08g20500Os.32425.1.S1_s_at11/118+12301496..12304733expressed protein
LOC_Os08g20520Os.50232.1.S1_x_at11/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20520Os.50232.2.S1_x_at8/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20520Os.51075.1.S1_x_at6/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20544Os.16867.1.S1_at11/118+12325204..12335841CLB1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50232.1.S1_x_at--135--9133Chr08:12307874..12307898 (25 bp)
TGCTGTTGCGGCATTCATGATGCAT
LOC_Os08g20520
Os.50232.1.S1_x_at--13--5853Chr08:12307900..12307924 (25 bp)
GACCTTGTGGTGATGCAAATCCGCA
LOC_Os08g20520
Os.50232.1.S1_x_at--825--4932Chr08:12307922..12307946 (25 bp)
GCATTGTTCATGCATGGTTGACGGT
LOC_Os08g20520
Os.50232.1.S1_x_at--1100--4333Chr08:12308006..12308030 (25 bp)
CCATGTAAGGTATGCTCGGCCAAAA
LOC_Os08g20520
Os.50232.1.S1_x_at--1153--5212Chr08:12308056..12308080 (25 bp)
GAATTTCTCTTGATAATCGGCATGT
LOC_Os08g20520
Os.50232.1.S1_x_at--1064--7872Chr08:12308204..12308228 (25 bp)
GGTTAGTCTCAAGCGCAAGCGGGCA
LOC_Os08g20520
Os.50232.1.S1_x_at--344--5172Chr08:12308218..12308242 (25 bp)
GCAAGCGGGCATGTGCTGGAACTAA
LOC_Os08g20520
Os.50232.1.S1_x_at--821--5272Chr08:12308282..12308306 (25 bp)
GAATGAGGCGGCATGGCGTTTAAAT
LOC_Os08g20520
Os.50232.1.S1_x_at--58--3953Chr08:12308331..12308355 (25 bp)
CGGCATGGCGTTTACTTCAGTTTGA
LOC_Os08g20520
Os.50232.1.S1_x_at--691--10413Chr08:12308362..12308386 (25 bp)
TTATACTGATCCTGCTATTGAGCGT
LOC_Os08g20520
Os.50232.1.S1_x_at--1151--8913Chr08:12308380..12308404 (25 bp)
TGAGCGTCTCCATGTACATATGCCA
LOC_Os08g20520
Target Sequence 
TGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCATTGTTCATGCATGGTTGACGGTAAATGCT
CAAAGAATTACCCGAAGGAATATTCTGAGAAAACAACAATCCTGCCAAATGGCCATGTAAGGTATGCTCGGCCAAAAAAT
GATATAATTGTTGCCAAAAATAGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACATCGATTTATTAGTCAAATA
TGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCAAATATGTTGCTAAGGGTTTTG
ATTGTTCGAGGGTTAGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGT
ATAGCGCCGAATGAGGCGGCATGGCGTTTAAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTACTTCAGTTT
GAGATTCATTATACTGATCCTGCTATTGAGCGTCTCCATGTACATATGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50232.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis