Browse Element(s) Details


OsAffx.29288.2.S1_at

Description tigr:9636.m02021
TID=OsAffx.29288.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2049210/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20470NANA8+12274519..12275040retrotransposon protein, putative, unclassified
LOC_Os08g20480OsAffx.29288.1.S1_at10/118+12278656..12286661F-box domain containing protein
LOC_Os08g20486OsAffx.5882.1.S1_at11/118+12286994..12293822transposon protein, putative, unclassified, expressed
LOC_Os08g20492OsAffx.29288.2.S1_at10/118+12297813..12300143F-box domain containing protein
LOC_Os08g20500Os.32425.1.S1_s_at11/118+12301496..12304733expressed protein
LOC_Os08g20520Os.50232.1.S1_x_at11/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20520Os.50232.2.S1_x_at8/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20520Os.51075.1.S1_x_at6/118+12306498..12310407AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29288.2.S1_at--230--7571Chr08:12299393..12299417 (25 bp)
GGGCCGCGAACTGCTTATCTAAGAT
LOC_Os08g20492
OsAffx.29288.2.S1_at--833--1611Chr08:12299213..12299237 (25 bp)
AGCTGGAGCAAATGGTACCTGTTGC
LOC_Os08g20492
OsAffx.29288.2.S1_at--1063--6971Chr08:12299199..12299223 (25 bp)
GTACCTGTTGCCAATCGCGGTGATG
LOC_Os08g20492
OsAffx.29288.2.S1_at--573--3431Chr08:12299153..12299177 (25 bp)
CAGAGGGTGTGGGTGTCATATTCAT
LOC_Os08g20492
OsAffx.29288.2.S1_at--219--7491Chr08:12299145..12299169 (25 bp)
GTGGGTGTCATATTCATGAGCACAG
LOC_Os08g20492
OsAffx.29288.2.S1_at--859--7691Chr08:12299060..12299084 (25 bp)
GGGTCTACTCTAGCGTCTTACCCTA
LOC_Os08g20492
OsAffx.29288.2.S1_at--847--10571NONE
TTCTACACTCCTGTTGAGCCTCAGA
NONE
OsAffx.29288.2.S1_at--532--6651Chr08:12298170..12298246 (25 bp)
GTTGAGCCTCAGAGATCTGCAAGTC
LOC_Os08g20492
OsAffx.29288.2.S1_at--111--6411Chr08:12298157..12298181 (25 bp)
GATCTGCAAGTCATGCGAAGCTGAA
LOC_Os08g20492
OsAffx.29288.2.S1_at--1010--3091Chr08:12298134..12298158 (25 bp)
AATAGCTGGATCATGTTTACTTCGA
LOC_Os08g20492
OsAffx.29288.2.S1_at--231--9871Chr08:12298117..12298141 (25 bp)
TACTTCGATTACAACCTTACAGGGC
LOC_Os08g20492
Target Sequence 
GGGCCGCGAACTGCTTATCTAAGATTGACCCGCCGATACGAGATGTGTATGACATTTCCCTCATGGAGATGGAGAACGGT
TCACTGGGTTATGCCTGCATTCAGGGTTCCAGCCTTTATGTGTGGTCGAGGAATGCCAGTTCAGAAGGGGCTGCAGAATG
GGTACAGTGCTGGGTGATTGAGCTGGAGCAAATGGTACCTGTTGCCAATCGCGGTGATGAAGCATTTGTTGTTGGCTCTG
CAGAGGGTGTGGGTGTCATATTCATGAGCACAGGTGTTGGATTATTCACGATCGAGCTCAAGTCAAGGCGGGTGAAGAAG
GTTGAAGAGCCTGGGGTCTACTCTAGCGTCTTACCCTACATGAGCTTCTACACTCCTGTTGAGCCTCAGAGATCTGCAAG
TCATGCGAAGCTGAATAGCTGGATCATGTTTACTTCGATTACAACCTTACAGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29288.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis