Browse Element(s) Details


OsAffx.5882.1.S1_at

Description tigr:9636.m02020
TID=OsAffx.5882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2048611/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20420Os.51876.1.S1_at11/118+12259749..122633281,2-diacylglycerol 3-beta-galactosyltransferase, putative, expressed
LOC_Os08g20440NANA8+12266346..12266780F-box domain containing protein
LOC_Os08g20450NANA8+12267064..12268327hypothetical protein
LOC_Os08g20460Os.54923.1.S1_at10/118+12270853..12271407SRF-type transcription factor family protein
LOC_Os08g20470NANA8+12274519..12275040retrotransposon protein, putative, unclassified
LOC_Os08g20480OsAffx.29288.1.S1_at10/118+12278656..12286661F-box domain containing protein
LOC_Os08g20486OsAffx.5882.1.S1_at11/118+12286994..12293822transposon protein, putative, unclassified, expressed
LOC_Os08g20492OsAffx.29288.2.S1_at10/118+12297813..12300143F-box domain containing protein
LOC_Os08g20500Os.32425.1.S1_s_at11/118+12301496..12304733expressed protein
LOC_Os08g20520Os.50232.1.S1_x_at11/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20520Os.50232.2.S1_x_at8/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20520Os.51075.1.S1_x_at6/118+12306498..12310407AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5882.1.S1_at--119--9711Chr08:12287563..12287587 (25 bp)
TCAAAGGATGGAATGTTATGCTCAC
LOC_Os08g20486
OsAffx.5882.1.S1_at--378--6791Chr08:12287549..12287573 (25 bp)
GTTATGCTCACATGTCCTGAAAGTA
LOC_Os08g20486
OsAffx.5882.1.S1_at--245--7071Chr08:12287527..12287551 (25 bp)
GTAATGTTGGACCTGAATGTCAGAA
LOC_Os08g20486
OsAffx.5882.1.S1_at--144--8051Chr08:12287419..12287443 (25 bp)
GGAGATAATTCAGTCCTAATGTTTA
LOC_Os08g20486
OsAffx.5882.1.S1_at--52--7271Chr08:12287407..12287431 (25 bp)
GTCCTAATGTTTAATGTGCTGTCTA
LOC_Os08g20486
OsAffx.5882.1.S1_at--823--8691Chr08:12287393..12287417 (25 bp)
TGTGCTGTCTAGGAAAGGAGCTGAC
LOC_Os08g20486
OsAffx.5882.1.S1_at--469--971Chr08:12287378..12287402 (25 bp)
AGGAGCTGACATAGCTTCAAAAGCA
LOC_Os08g20486
OsAffx.5882.1.S1_at--989--6531Chr08:12287332..12287356 (25 bp)
GATTACCTTGTAGATGAACTTGACA
LOC_Os08g20486
OsAffx.5882.1.S1_at--986--8191Chr08:12287273..12287297 (25 bp)
GGAAGATCAAACTCAATTCTCACAA
LOC_Os08g20486
OsAffx.5882.1.S1_at--767--111Chr08:12287258..12287282 (25 bp)
ATTCTCACAACATCAAGACAGTGGT
LOC_Os08g20486
OsAffx.5882.1.S1_at--128--5951Chr08:12287182..12287206 (25 bp)
GAGCACATAGAAGATCCTGATACAG
LOC_Os08g20486
Target Sequence 
TCAAAGGATGGAATGTTATGCTCACATGTCCTGAAAGTAATGTTGGACCTGAATGTCAGAAAAATTCCAGAAAAATACAT
AATTGAAAGATGGAGAAAGAAGGAAAGGAAAGAAACAAAAAAGCACATCATGCAGAAAGAAAATGGAGATAATTCAGTCC
TAATGTTTAATGTGCTGTCTAGGAAAGGAGCTGACATAGCTTCAAAAGCATCAAAAAGAAAAAGAACATATGATTACCTT
GTAGATGAACTTGACAAGTTGGAGAAGAACATTGACTTAATGATTCAACAGGAAGATCAAACTCAATTCTCACAACATCA
AGACAGTGGTATAGAAATTGCAAATGCAGAGCAACAAGAGCAAGAAAAAGATGTTCAAGAAGAGCACATAGAAGATCCTG
ATACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis