Browse Element(s) Details


Os.51075.1.S1_x_at

Description gb:AK060535.1
DB_XREF= gi:32970553
TID=Os.51075.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C08, full insert sequence.
FL= gb:AK060535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1613011/11AT hook motif-containing protein, putative, expressed
LOC_Os08g205206/11AT hook motif-containing protein, putative
LOC_Os06g081541/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16110Os.26795.1.S1_s_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16110Os.26795.2.S1_x_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16120OsAffx.23266.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16120Os.51640.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16130Os.51075.1.S1_x_at11/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16130Os.21810.1.S1_at9/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16140Os.31233.2.S1_at10/111+9110670..9111238expressed protein
LOC_Os01g16146OsAffx.11075.1.S1_x_at11/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146OsAffx.11075.1.S1_at10/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146Os.20404.1.S1_at9/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16152Os.115.1.S1_at11/111+9114957..9118213AhpC/TSA family protein, expressed
LOC_Os01g16160OsAffx.5954.5.S1_x_at4/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.1.S1_x_at2/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.2.S1_at1/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.3.S1_x_at1/111+9123286..9128634retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51075.1.S1_x_at--704--3153Chr08:12309973..12309997 (25 bp)
AATTCTCACACAGCCAATTATCTCT
LOC_Os08g20520
Os.51075.1.S1_x_at--618--8912Chr08:12309999..12310023 (25 bp)
TGAGCGAGCAATTCTAGCCCCAACA
LOC_Os08g20520
Os.51075.1.S1_x_at--765--3152Chr08:12310045..12310069 (25 bp)
AATTCCCAAATGATTGCTCAGCTGA
LOC_Os08g20520
Os.51075.1.S1_x_at--209--2852Chr08:12310119..12310143 (25 bp)
AAGTAATCGTGCCACTCTTGATGCT
LOC_Os08g20520
Os.51075.1.S1_x_at--919--8832Chr08:12310137..12310161 (25 bp)
TGATGCTCTTTACCCAACTGAGTTC
LOC_Os08g20520
Os.51075.1.S1_x_at--304--2272Chr08:12310175..12310199 (25 bp)
AAATCAGCGGTTTGCCAGACCATCA
LOC_Os08g20520
Os.51075.1.S1_x_at--236--6111Chr01:9098046..9098070 (25 bp)
GAGTGCTGATTATGCTGCTGCGCAA
LOC_Os01g16130
Os.51075.1.S1_x_at--43--691Chr01:9098093..9098117 (25 bp)
ATGACTCAATTGACTTGTCGTGTGA
LOC_Os01g16130
Os.51075.1.S1_x_at--580--2671Chr01:9098216..9098240 (25 bp)
AAGCGCCGACAATTTCCTGTATGTG
LOC_Os01g16130
Os.51075.1.S1_x_at--705--4271Chr01:9098312..9098336 (25 bp)
CCTGTCTTCTCACATGGACAACTTT
LOC_Os01g16130
Os.51075.1.S1_x_at--76--9333Chr08:12310574..12310598 (25 bp)
TCGCCTGATGGTCTTCGTATTCTAA
NONE
Target Sequence 
AATTCTCACACAGCCAATTATCTCTGTGAGCGAGCAATTCTAGCCCCAACAAATGAAATCGCTGCAAGTATAAATTCCCA
AATGATTGCTCAGCTGACTACTGAAGAAATGTCATACTATAGTTCAGACACAATTGAAGATACTACAAGTAATCGTGCCA
CTCTTGATGCTCTTTACCCAACTGAGTTCCTGAACACTATAAAAATCAGCGGTTTGCCAGACCATCACCTTCAACTAAAA
ATAGGAGTGCTGATTATGCTGCTGCGCAATCTGAACCCAACCAGACTTATAATGACTCAATTGACTTGTCGTGTGATAGA
AGGGGAGATAATTACAGGGAAGGCTAAAGGATCCAAGGCATATATACCAAGGATAGTAACCACTTCAATTGATAAGAAGT
GGCCTTTTAAATTAAAGCGCCGACAATTTCCTGTATGTGTGTCATATGCATTGACTATAAATAAAAGTCAAGGGCAAACA
CTTAGTAGAGTTGGTGTCTACTTACCTAGCCCTGTCTTCTCACATGGACAACTTTATGTCGCACTCTCACGTGTAACATC
GCCTGATGGTCTTCGTATTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51075.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis