Browse Element(s) Details


Os.26795.1.S1_s_at

Description gb:AK121684.1
DB_XREF= gi:37991307
TID=Os.26795.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070C16, full insert sequence.
FL= gb:AK121684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1611011/11La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16070NANA1+9050313..9050730hypothetical protein
LOC_Os01g16080Os.16709.1.S1_at9/111+9054660..9057841expressed protein
LOC_Os01g16080Os.16709.2.S1_x_at9/111+9054660..9057841expressed protein
LOC_Os01g16090Os.106.1.S1_at11/111+9060770..9063588RNA recognition motif family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_at11/111+9064634..9067872Translin family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_s_at10/111+9064634..9067872Translin family protein, expressed
LOC_Os01g16110Os.26795.1.S1_s_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16110Os.26795.2.S1_x_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16120OsAffx.23266.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16120Os.51640.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16130Os.51075.1.S1_x_at11/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16130Os.21810.1.S1_at9/111+9096411..9099538AT hook motif-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26795.1.S1_s_at--736--4231Chr01:9080177..9080201 (25 bp)
TCCTAAAGGAGGAGTTCCGAACCAT
LOC_Os01g16110
Os.26795.1.S1_s_at--706--2291Chr01:9080181..9080205 (25 bp)
AAAGGAGGAGTTCCGAACCATCGAG
LOC_Os01g16110
Os.26795.1.S1_s_at--697--6151Chr01:9080185..9080209 (25 bp)
GAGGAGTTCCGAACCATCGAGGATT
LOC_Os01g16110
Os.26795.1.S1_s_at--483--8031Chr01:9080187..9080211 (25 bp)
GGAGTTCCGAACCATCGAGGATTTC
LOC_Os01g16110
Os.26795.1.S1_s_at--279--1151Chr01:9080189..9080213 (25 bp)
AGTTCCGAACCATCGAGGATTTCAA
LOC_Os01g16110
Os.26795.1.S1_s_at--472--9291Chr01:9080192..9080216 (25 bp)
TCCGAACCATCGAGGATTTCAAGGC
LOC_Os01g16110
Os.26795.1.S1_s_at--993--5331Chr01:9080286..9080310 (25 bp)
GAAGTAGGTCCTAGCATGGCATGAA
LOC_Os01g16110
Os.26795.1.S1_s_at--701--1191Chr01:9080288..9080312 (25 bp)
AGTAGGTCCTAGCATGGCATGAAAT
LOC_Os01g16110
Os.26795.1.S1_s_at--113--7271Chr01:9080293..9080317 (25 bp)
GTCCTAGCATGGCATGAAATTTTGG
LOC_Os01g16110
Os.26795.1.S1_s_at--1059--8631Chr01:9080428..9080452 (25 bp)
TGTGTGGCCTTGTCCAGGAAATTTT
LOC_Os01g16110
Os.26795.1.S1_s_at--1099--7531Chr01:9080431..9080455 (25 bp)
GTGGCCTTGTCCAGGAAATTTTCCT
LOC_Os01g16110
Target Sequence 
TCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCACGGAAGGCAGCAGAGAAAGAAACTGGCAGCAGTACTGCT
GCCGCCGCAGGCCATAACAAGGCTGATGCGAAGTAGGTCCTAGCATGGCATGAAATTTTGGTGGTCATCCCACAAAAAGG
AGAAAGTAGCAAAACCGTTTTTGTTTGGTGAAAAACTTAAGGATTTGAGTAGACACCTGTGCAGATTTTGTTCTCCCCTG
CCGACGATACTTGTGTGGCCTTGTCCAGGAAATTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26795.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis