Browse Element(s) Details


OsAffx.2017.1.S1_s_at

Description gb:NM_188007.1
DB_XREF= gi:34903097
TID=OsAffx.2017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1610010/11Translin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16060OsAffx.11074.1.S1_s_at11/111+9038382..9042889expressed protein
LOC_Os01g16060Os.33034.2.S1_x_at10/111+9038382..9042889expressed protein
LOC_Os01g16060Os.22825.1.A1_at1/111+9038382..9042889expressed protein
LOC_Os01g16070NANA1+9050313..9050730hypothetical protein
LOC_Os01g16080Os.16709.1.S1_at9/111+9054660..9057841expressed protein
LOC_Os01g16080Os.16709.2.S1_x_at9/111+9054660..9057841expressed protein
LOC_Os01g16090Os.106.1.S1_at11/111+9060770..9063588RNA recognition motif family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_at11/111+9064634..9067872Translin family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_s_at10/111+9064634..9067872Translin family protein, expressed
LOC_Os01g16110Os.26795.1.S1_s_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16110Os.26795.2.S1_x_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16120OsAffx.23266.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16120Os.51640.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2017.1.S1_s_at--101--6411Chr01:9066369..9066393 (25 bp)
GATCTCACTGTTGTGGTTAACCAAT
LOC_Os01g16100
OsAffx.2017.1.S1_s_at--1011--5031Chr01:9066161..9066185 (25 bp)
GCAGATTTTGCAAGACTGGCACTTT
LOC_Os01g16100
OsAffx.2017.1.S1_s_at--399--6571Chr01:9066114..9066138 (25 bp)
GATTCTTTGCTAGAGCTGGGTGACA
LOC_Os01g16100
OsAffx.2017.1.S1_s_at--337--7371Chr01:9066095..9066119 (25 bp)
GTGACAAATCTGTTGAGCCCTTACA
LOC_Os01g16100
OsAffx.2017.1.S1_s_at--494--6671Chr01:9065947..9065971 (25 bp)
GTTGCCGATCTGTCAGGAGAGCTGA
LOC_Os01g16100
OsAffx.2017.1.S1_s_at--311--6211Chr01:9065921..9065945 (25 bp)
GAGGCTTGCAATTGGCCGTATATCT
LOC_Os01g16100
OsAffx.2017.1.S1_s_at--847--9851Chr01:9065845..9065869 (25 bp)
TACAGGGAGCTGACCCTTGTGGTGC
LOC_Os01g16100
OsAffx.2017.1.S1_s_at--37--7791Chr01:9065825..9065849 (25 bp)
GGTGCCTCTGATGGATGACAATAGT
LOC_Os01g16100
OsAffx.2017.1.S1_s_at--758--5951NONE
GAGAATGCTTGCTTCAGTGTTCATG
NONE
OsAffx.2017.1.S1_s_at--93--411Chr01:9064688..9064712 (25 bp)
ATCAGAGTACATCCCTTTGCTTGGC
LOC_Os01g16100
OsAffx.2017.1.S1_s_at--278--10271Chr01:9064673..9064697 (25 bp)
TTTGCTTGGCTCATCTGCTGATCCA
LOC_Os01g16100
Target Sequence 
GATCTCACTGTTGTGGTTAACCAATACATTGGGAAGTTGGTAAAAGAACTGCAAGGGACCGACTTCTGGAAGCTCAGAAG
GGCCTATACCTTTGGTGTACAAGAATATGTTGAAGCTGCAACATTCTGCAGATTTTGCAAGACTGGCACTTTATTAAGTC
TTGCTGAAATCAATGATTCTTTGCTAGAGCTGGGTGACAAATCTGTTGAGCCCTTACAGATAAATGTACTCGACTATGTT
TTAGGGGTTGCCGATCTGTCAGGAGAGCTGATGAGGCTTGCAATTGGCCGTATATCTGATGGAGAAGTTGAATATGCCAA
AAACATTTGTGCATTTGTACGTGATATATACAGGGAGCTGACCCTTGTGGTGCCTCTGATGGATGACAATAGTGAGATGA
AGAAGAAGATGGAGACTATGCTGCAAAGTGTAGTGAAAATTGAGAATGCTTGCTTCAGTGTTCATGTGAGAGGATCAGAG
TACATCCCTTTGCTTGGCTCATCTGCTGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2017.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis