Browse Element(s) Details


Os.16709.1.S1_at

Description gb:AK111252.1
DB_XREF= gi:32996461
TID=Os.16709.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-E02, full insert sequence.
FL= gb:AK111252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g160809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16050NANA1+9026233..9031175transposon protein, putative, Mutator sub-class
LOC_Os01g16060OsAffx.11074.1.S1_s_at11/111+9038382..9042889expressed protein
LOC_Os01g16060Os.33034.2.S1_x_at10/111+9038382..9042889expressed protein
LOC_Os01g16060Os.22825.1.A1_at1/111+9038382..9042889expressed protein
LOC_Os01g16070NANA1+9050313..9050730hypothetical protein
LOC_Os01g16080Os.16709.1.S1_at9/111+9054660..9057841expressed protein
LOC_Os01g16080Os.16709.2.S1_x_at9/111+9054660..9057841expressed protein
LOC_Os01g16090Os.106.1.S1_at11/111+9060770..9063588RNA recognition motif family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_at11/111+9064634..9067872Translin family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_s_at10/111+9064634..9067872Translin family protein, expressed
LOC_Os01g16110Os.26795.1.S1_s_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16110Os.26795.2.S1_x_at11/111+9071415..9080597La domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16709.1.S1_at--90--7791Chr01:9055086..9055110 (25 bp)
GGTGCGCTATGAGATTGATGCCCTT
LOC_Os01g16080
Os.16709.1.S1_at--1141--6631Chr01:9055028..9055052 (25 bp)
GTTGAAGAAGCTTTCCCTGATACTC
LOC_Os01g16080
Os.16709.1.S1_at--947--2691Chr01:9055021..9055045 (25 bp)
AAGCTTTCCCTGATACTCTATTGAT
LOC_Os01g16080
Os.16709.1.S1_at--154--3711Chr01:9054980..9055004 (25 bp)
CTAGGCGCTAAAAGGCAGAGTGAAA
LOC_Os01g16080
Os.16709.1.S1_at--444--2451Chr01:9054926..9054950 (25 bp)
AACAAACAAGCTATTCGTGTCCCTT
LOC_Os01g16080
Os.16709.1.S1_at--383--5291Chr01:9054803..9054827 (25 bp)
GAATGTGGCATGCTTTTGGTCCCTT
LOC_Os01g16080
Os.16709.1.S1_at--8--10251Chr01:9054789..9054813 (25 bp)
TTTGGTCCCTTGTTATTCACTAGAA
LOC_Os01g16080
Os.16709.1.S1_at--750--791Chr01:9054755..9054779 (25 bp)
ATGTGGGATGCAATCTTTATGGGAT
LOC_Os01g16080
Os.16709.1.S1_at--26--8591Chr01:9054675..9054699 (25 bp)
TGGTATACTCATGCCAATAAGATTT
LOC_Os01g16080
Os.16709.1.S1_at--1023--10311Chr01:9054652..9054676 (25 bp)
TTTCTAAGGCTCAAGCTAACCCAGG
NONE
Os.16709.1.S1_at--311--4831Chr01:9054638..9054662 (25 bp)
GCTAACCCAGGCTTGACCATTTTGT
NONE
Target Sequence 
GGTGCGCTATGAGATTGATGCCCTTGGGGCAGAAATAATTGGTAATAACTTGGCTGAAGTTGAAGAAGCTTTCCCTGATA
CTCTATTGATAAAATAGAAAAGTNGCCTAGGCGCTAAAAGGCAGAGTGAAAACAAACAATTGGCACAAATATTTTGGACT
AACAAACAAGCTATTCGTGTCCCTTNGGGGATTTATTAAAAAAAAGGAGAGAGAAGAGAACCGGAAGATTTGTTTANGCC
AGCATTGCTTCTTTGGTGTTCTGCTATTCNCTAGAATTCAGAGGAATGTGGCATGCTTTTGGTCCCTTGTTATTCACTAG
AATTCAAAGGAATGTGGGATGCAATCTTTATGGGATCGATATTCGATAGAGAATGTGATCTGAAATTGTTGTGAATATTG
TTATACTAATTTGGTATACTCATGCCAATAAGATTTTCTAAGGCTCAAGCTAACCCAGGCTTGACCATTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis