Browse Element(s) Details


Os.51640.1.S1_s_at

Description gb:AK063246.1
DB_XREF= gi:32973264
TID=Os.51640.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-G10, full insert sequence.
FL= gb:AK063246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1612011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16090Os.106.1.S1_at11/111+9060770..9063588RNA recognition motif family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_at11/111+9064634..9067872Translin family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_s_at10/111+9064634..9067872Translin family protein, expressed
LOC_Os01g16110Os.26795.1.S1_s_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16110Os.26795.2.S1_x_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16120OsAffx.23266.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16120Os.51640.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16130Os.51075.1.S1_x_at11/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16130Os.21810.1.S1_at9/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16140Os.31233.2.S1_at10/111+9110670..9111238expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0010200biological_processresponse to chitin
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51640.1.S1_s_at--967--1831Chr01:9085245..9085269 (25 bp)
ACGCGGCTCCCGTGGACTGCGTGTT
LOC_Os01g16120
Os.51640.1.S1_s_at--831--3931Chr01:9085248..9085272 (25 bp)
CGGCTCCCGTGGACTGCGTGTTCTG
LOC_Os01g16120
Os.51640.1.S1_s_at--555--3991Chr01:9085255..9085279 (25 bp)
CGTGGACTGCGTGTTCTGCCTGTCG
LOC_Os01g16120
Os.51640.1.S1_s_at--676--8531Chr01:9085257..9085281 (25 bp)
TGGACTGCGTGTTCTGCCTGTCGCG
LOC_Os01g16120
Os.51640.1.S1_s_at--816--1971Chr01:9085260..9085284 (25 bp)
ACTGCGTGTTCTGCCTGTCGCGGGT
LOC_Os01g16120
Os.51640.1.S1_s_at--919--3991Chr01:9085264..9085288 (25 bp)
CGTGTTCTGCCTGTCGCGGGTGGAC
LOC_Os01g16120
Os.51640.1.S1_s_at--156--6171Chr01:9085295..9085319 (25 bp)
GAGGAGGTCCGCGAGCTCCGGTGCC
LOC_Os01g16120
Os.51640.1.S1_s_at--275--5791Chr01:9085454..9085478 (25 bp)
GACGACGACGTCCACTTCGGCTTCA
LOC_Os01g16120
Os.51640.1.S1_s_at--761--1851Chr01:9085458..9085482 (25 bp)
ACGACGTCCACTTCGGCTTCAACGA
LOC_Os01g16120
Os.51640.1.S1_s_at--295--7271Chr01:9085463..9085487 (25 bp)
GTCCACTTCGGCTTCAACGACTTCT
LOC_Os01g16120
Os.51640.1.S1_s_at--135--2051Chr01:9085467..9085491 (25 bp)
ACTTCGGCTTCAACGACTTCTCCAT
LOC_Os01g16120
Target Sequence 
ACGCGGCTCCCGTGGACTGCGTGTTCTGCCTGTCGCGGGTGGACGACGGCGAGGAGGTCCGCGAGCTCCGGTGCCGCCAC
GTCTTCCACCGCGCCTGCCTCGACGCCTGGCTCGTCCTCCCGCGCGCCACCTGCCCGCTCTGCCGCGACTGCCTCCTCCC
GCCGCCGTGCGAGCCGCCGCGCAGCTTCCCGCTCGACTACTACGACGACGACGACGACGTCCACTTCGGCTTCAACGACT
TCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51640.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis