Browse Element(s) Details


Os.21810.1.S1_at

Description gb:CA763205
DB_XREF= gi:25807244
DB_XREF=BR060001000A09.ab1
CLONE=BR060001000A09.ab1
TID=Os.21810.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g161309/11AT hook motif-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16110Os.26795.1.S1_s_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16110Os.26795.2.S1_x_at11/111+9071415..9080597La domain containing protein, expressed
LOC_Os01g16120OsAffx.23266.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16120Os.51640.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16130Os.51075.1.S1_x_at11/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16130Os.21810.1.S1_at9/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16140Os.31233.2.S1_at10/111+9110670..9111238expressed protein
LOC_Os01g16146OsAffx.11075.1.S1_x_at11/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146OsAffx.11075.1.S1_at10/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146Os.20404.1.S1_at9/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16152Os.115.1.S1_at11/111+9114957..9118213AhpC/TSA family protein, expressed
LOC_Os01g16160OsAffx.5954.5.S1_x_at4/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.1.S1_x_at2/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.2.S1_at1/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.3.S1_x_at1/111+9123286..9128634retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21810.1.S1_at--954--9191NONE
TGCCATCATATGAAGAACCAAGCAT
NONE
Os.21810.1.S1_at--207--10111NONE
TATGAAGAACCAAGCATCCAACCAT
NONE
Os.21810.1.S1_at--827--8991Chr01:9099304..9099327 (24 bp)
TGAAGAACCAAGCATCCAACCATCT
LOC_Os01g16130
Os.21810.1.S1_at--872--5371Chr01:9099304..9099328 (25 bp)
GAAGAACCAAGCATCCAACCATCTC
LOC_Os01g16130
Os.21810.1.S1_at--475--6432Chr01:9099332..9099356 (25 bp)
GATCATTATAAATTTCATTTTTCCA
LOC_Os01g16130
Os.21810.1.S1_at--611--4292Chr01:9099392..9099416 (25 bp)
CCTCTATGCCCTATTATGTACCTTT
LOC_Os01g16130
Os.21810.1.S1_at--890--3752Chr01:9099393..9099417 (25 bp)
CTCTATGCCCTATTATGTACCTTTT
LOC_Os01g16130
Os.21810.1.S1_at--302--9552Chr01:9099394..9099418 (25 bp)
TCTATGCCCTATTATGTACCTTTTG
LOC_Os01g16130
Os.21810.1.S1_at--1090--3692Chr01:9099395..9099419 (25 bp)
CTATGCCCTATTATGTACCTTTTGG
LOC_Os01g16130
Os.21810.1.S1_at--73--10212Chr01:9099403..9099427 (25 bp)
TATTATGTACCTTTTGGCTTGCAAG
LOC_Os01g16130
Os.21810.1.S1_at--831--152Chr01:9099404..9099428 (25 bp)
ATTATGTACCTTTTGGCTTGCAAGA
LOC_Os01g16130
Target Sequence 
TGCCATCATATGAAGAACCAAGCATCCAACCATCTCAATGATCATTATAAATTTCATTTTTCCATCAGCAGGTGTTNTCC
TAGAAAACAGATCAATGCNCCTCTATGCCCTATTATGTACCTTTTGGCTTGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis