Browse Element(s) Details


Os.31233.2.S1_at

Description gb:AK121188.1
DB_XREF= gi:37990811
TID=Os.31233.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1156H12.9 (B1156H12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085H22, full insert sequence.
FL= gb:AK121188.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1614010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16120OsAffx.23266.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16120Os.51640.1.S1_s_at11/111+9084890..9085912Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16130Os.51075.1.S1_x_at11/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16130Os.21810.1.S1_at9/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16140Os.31233.2.S1_at10/111+9110670..9111238expressed protein
LOC_Os01g16146OsAffx.11075.1.S1_x_at11/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146OsAffx.11075.1.S1_at10/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146Os.20404.1.S1_at9/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16152Os.115.1.S1_at11/111+9114957..9118213AhpC/TSA family protein, expressed
LOC_Os01g16160OsAffx.5954.5.S1_x_at4/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.1.S1_x_at2/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.2.S1_at1/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.3.S1_x_at1/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16170Os.15490.1.S1_at11/111+9130321..9137232PQ loop repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31233.2.S1_at--204--9451Chr01:9110684..9110708 (25 bp)
TCGGAGGTAGCTACAGCCGAATCCC
LOC_Os01g16140
Os.31233.2.S1_at--142--2011Chr01:9110757..9110781 (25 bp)
ACTCGGATCGATCTCGTTGTTGTGT
LOC_Os01g16140
Os.31233.2.S1_at--838--8911Chr01:9110791..9110815 (25 bp)
TGAGCTTTGGTCGATGGCGTCGATC
LOC_Os01g16140
Os.31233.2.S1_at--113--7071Chr01:9110858..9110882 (25 bp)
GTAATGGCGGCTGACTGGTACATGA
LOC_Os01g16140
Os.31233.2.S1_at--613--691Chr01:9110879..9110903 (25 bp)
ATGAGCGGACACAGCCTCCGGGAGT
LOC_Os01g16140
Os.31233.2.S1_at--901--531Chr01:9111029..9111053 (25 bp)
ATCGCGGTCGACGTGATGTGGCCTT
LOC_Os01g16140
Os.31233.2.S1_at--970--6251Chr01:9111043..9111067 (25 bp)
GATGTGGCCTTAGAGCATCCGTCGC
LOC_Os01g16140
Os.31233.2.S1_at--962--1871Chr01:9111151..9111175 (25 bp)
ACGAGGCATGTGTTGTGTACTGTTC
LOC_Os01g16140
Os.31233.2.S1_at--476--6631Chr01:9111162..9111186 (25 bp)
GTTGTGTACTGTTCTTTTTGAGATC
LOC_Os01g16140
Os.31233.2.S1_at--808--4091Chr01:9111202..9111226 (25 bp)
CGAAGTGATTCTTGGATGTTTTTCA
LOC_Os01g16140
Os.31233.2.S1_at--652--8731Chr01:9111227..9111251 (25 bp)
TGTCATTTTGTCATCGATTTTCTCC
NONE
Target Sequence 
TCGGAGGTAGCTACAGCCGAATCCCCCAACAGTTGTGTGCAATTTCTTGCTTGCTTGGTTTTCTTTTCCCCCCACTCGGA
TCGATCTCGTTGTTGTGTGAGGTTTTTTGAGCTTTGGTCGATGGCGTCGATCGTGCTGCTGCTGTCGGAGCTGCTCGGCG
GCGAGAGCACCAGCGTAATGGCGGCTGACTGGTACATGAGCGGACACAGCCTCCGGGAGTTCCGGCCCGTGGCGGCTGCT
CCGGCGGCGGCGGCGGCGGTGGCCAAGTGCGAGCGGCCGGCGGCCNAGGCAGCGGGGGAGAAGAAGAAGGAGGAGTCGTT
CGAGGATCTCGCCGCCGTGTCCCGGATCGCGGTCGACGTGATGTGGCCTTAGAGCATCCGTCGCCGCCATCTCGCCGGAG
AAGAAGAAAAAGAAAATTCTATTCTTGAGTTTTTTTTCTCTATTTTTCTCCTTTTTTTTTGGTTGCCAACGAGGCATGTG
TTGTGTACTGTTCTTTTTGAGATCAGATTTGTAAATATACGAAGTGATTCTTGGATGTTTTTCATGTCATTTTGTCATCG
ATTTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31233.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis