Browse Element(s) Details


OsAffx.11075.1.S1_x_at

Description tigr:9629.m01606
TID=OsAffx.11075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phenazine biosynthesis protein PhzF family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1614611/11phenazine biosynthesis protein PhzF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16130Os.51075.1.S1_x_at11/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16130Os.21810.1.S1_at9/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16140Os.31233.2.S1_at10/111+9110670..9111238expressed protein
LOC_Os01g16146OsAffx.11075.1.S1_x_at11/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146OsAffx.11075.1.S1_at10/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146Os.20404.1.S1_at9/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16152Os.115.1.S1_at11/111+9114957..9118213AhpC/TSA family protein, expressed
LOC_Os01g16160OsAffx.5954.5.S1_x_at4/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.1.S1_x_at2/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.2.S1_at1/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.3.S1_x_at1/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16170Os.15490.1.S1_at11/111+9130321..9137232PQ loop repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11075.1.S1_x_at--678--191Chr01:9113480..9113504 (25 bp)
ATTTCCCCATGATCGATCTCGTGGA
LOC_Os01g16146
OsAffx.11075.1.S1_x_at--1054--8051Chr01:9113443..9113467 (25 bp)
GGAGACGCTGTCGATTCCGGAGACT
LOC_Os01g16146
OsAffx.11075.1.S1_x_at--923--4151Chr01:9113410..9113434 (25 bp)
CGCCCGAGTCGTCAGTGTTTGGAAA
LOC_Os01g16146
OsAffx.11075.1.S1_x_at--595--10231Chr01:9113393..9113417 (25 bp)
TTTGGAAATCATCAACCGCCGGTGA
LOC_Os01g16146
OsAffx.11075.1.S1_x_at--930--4471Chr01:9113017..9113400 (25 bp)
GCCGGTGACCTCATCATTAAAATGG
LOC_Os01g16146
OsAffx.11075.1.S1_x_at--131--8991Chr01:9112986..9113010 (25 bp)
TGAACCATGGCAATGCTACCGCTAC
LOC_Os01g16146
OsAffx.11075.1.S1_x_at--1086--9951Chr01:9112970..9112994 (25 bp)
TACCGCTACGATTATTTCCCTAAGA
LOC_Os01g16146
OsAffx.11075.1.S1_x_at--122--8891Chr01:9112780..9112931 (25 bp)
TGAGGAGTTGGTGGAACTTTCTTCC
LOC_Os01g16146
OsAffx.11075.1.S1_x_at--781--8031Chr01:9112695..9112719 (25 bp)
GGAGTTATTGTTACGGGACCAGCAC
LOC_Os01g16146
OsAffx.11075.1.S1_x_at--90--9671Chr01:9112644..9112668 (25 bp)
TCACGATTCTTCTGCCCAAAATTTG
LOC_Os01g16146
OsAffx.11075.1.S1_x_at--833--5411Chr01:9111800..9111824 (25 bp)
GAAGCGCACATTGTGTTCTGGCACC
LOC_Os01g16146
Target Sequence 
ATTTCCCCATGATCGATCTCGTGGAGTACGATTCCGCGGAGACGCTGTCGATTCCGGAGACTCTGAATGGCGCCCGAGTC
GTCAGTGTTTGGAAATCATCAACCGCCGGTGACCTCATCATTAAAATGGAGGTCATGAACCATGGCAATGCTACCGCTAC
GATTATTTCCCTAAGAGAAAGAATTGCTAATCTTTTAAGGATGCTAATATTAAATGAGGAGTTGGTGGAACTTTCTTCCG
GAAAAGAGGTTGCTGATATTATCCCTAACATTAATGAAATTAAAAAATGTGATGGTAGAGGAGTTATTGTTACGGGACCA
GCACCTGCTGGATCTGATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGGATCCTGTGTGTGG
AAGCGCACATTGTGTTCTGGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11075.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis