Browse Element(s) Details


Os.20404.1.S1_at

Description gb:AK101084.1
DB_XREF= gi:32986293
TID=Os.20404.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024I08, full insert sequence.
FL= gb:AK101084.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g161469/11phenazine biosynthesis protein PhzF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16130Os.51075.1.S1_x_at11/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16130Os.21810.1.S1_at9/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16140Os.31233.2.S1_at10/111+9110670..9111238expressed protein
LOC_Os01g16146OsAffx.11075.1.S1_x_at11/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146OsAffx.11075.1.S1_at10/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146Os.20404.1.S1_at9/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16152Os.115.1.S1_at11/111+9114957..9118213AhpC/TSA family protein, expressed
LOC_Os01g16160OsAffx.5954.5.S1_x_at4/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.1.S1_x_at2/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.2.S1_at1/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.3.S1_x_at1/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16170Os.15490.1.S1_at11/111+9130321..9137232PQ loop repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20404.1.S1_at--826--7751NONE
GGTGACCTCATCGTGGAACTTTCTT
NONE
Os.20404.1.S1_at--570--2011Chr01:9111520..9111544 (25 bp)
ACTCTCTTGGCGTAGCATCTCTCTC
LOC_Os01g16146
Os.20404.1.S1_at--70--6971Chr01:9111509..9111533 (25 bp)
GTAGCATCTCTCTCTGTCAGAGTGT
LOC_Os01g16146
Os.20404.1.S1_at--1097--9511Chr01:9111501..9111525 (25 bp)
TCTCTCTGTCAGAGTGTCTGGCGAT
LOC_Os01g16146
Os.20404.1.S1_at--1035--1331Chr01:9111491..9111515 (25 bp)
AGAGTGTCTGGCGATCTGCTTGCTC
LOC_Os01g16146
Os.20404.1.S1_at--931--471Chr01:9111478..9111502 (25 bp)
ATCTGCTTGCTCTTGTATGCTTGAG
LOC_Os01g16146
Os.20404.1.S1_at--330--9071Chr01:9111461..9111485 (25 bp)
TGCTTGAGAGTTCAGCGGAGAAATT
LOC_Os01g16146
Os.20404.1.S1_at--437--5591Chr01:9111442..9111466 (25 bp)
GAAATTGTTGTTGTTCGACGCGTAC
LOC_Os01g16146
Os.20404.1.S1_at--183--5811Chr01:9111426..9111450 (25 bp)
GACGCGTACCGCGAACGATTGTAAT
LOC_Os01g16146
Os.20404.1.S1_at--1112--1751Chr01:9111419..9111443 (25 bp)
ACCGCGAACGATTGTAATTGATGTT
LOC_Os01g16146
Os.20404.1.S1_at--166--2311Chr01:9111381..9111405 (25 bp)
AAAGGATCTGCAATGTTTATGAAGC
NONE
Target Sequence 
GGTGACCTCATCGTGGAACTTTCTTCCGGAAAAGAGGTTGCTGATATTATCCCTAACATTAATGAAATTAAAAAATGTGA
TGGTAGAGGAGTTATTGTTACGGGACCAGCACCTGCTGGATCTGATTATGACTTCTTTTCACGATTCTTCTGCCCAAAAT
TTGGGATAGATGAGGATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAAAGCTGGGGAAACAA
AAACTTACGGCGTTTCAGGCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGGAGAGTCCGGAT
CCAGGGAGAAGCTGTCACTGTGATGGCCGGGACTCTCTTGGCGTAGCATCTCTCTCTGTCAGAGTGTCTGGCGATCTGCT
TGCTCTTGTATGCTTGAGAGTTCAGCGGAGAAATTGTTGTTGTTCGACGCGTACCGCGAACGATTGTAATTGATGTTATA
TTTGGGAATAAAAGGATCTGCAATGTTTATGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis