Browse Element(s) Details


Os.115.1.S1_at

Description gb:AK058396.1
DB_XREF= gi:32968414
TID=Os.115.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-A12, full insert sequence.
FL= gb:AK058396.1 gb:AK069749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1615211/11AhpC/TSA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16130Os.51075.1.S1_x_at11/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16130Os.21810.1.S1_at9/111+9096411..9099538AT hook motif-containing protein, putative, expressed
LOC_Os01g16140Os.31233.2.S1_at10/111+9110670..9111238expressed protein
LOC_Os01g16146OsAffx.11075.1.S1_x_at11/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146OsAffx.11075.1.S1_at10/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146Os.20404.1.S1_at9/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16152Os.115.1.S1_at11/111+9114957..9118213AhpC/TSA family protein, expressed
LOC_Os01g16160OsAffx.5954.5.S1_x_at4/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.1.S1_x_at2/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.2.S1_at1/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.3.S1_x_at1/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16170Os.15490.1.S1_at11/111+9130321..9137232PQ loop repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0004601molecular_functionperoxidase activity
GO:0016209molecular_functionantioxidant activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.115.1.S1_at--381--9471Chr01:9115201..9115225 (25 bp)
TCTGGTGCCGAGGTGATCTTGGACC
LOC_Os01g16152
Os.115.1.S1_at--417--431Chr01:9115186..9115210 (25 bp)
ATCTTGGACCAAATCTGATCCGAGT
LOC_Os01g16152
Os.115.1.S1_at--196--3871Chr01:9115172..9115196 (25 bp)
CTGATCCGAGTAACGAAATTCTGTC
LOC_Os01g16152
Os.115.1.S1_at--308--3151Chr01:9115156..9115180 (25 bp)
AATTCTGTCGTTGTTTGTTTTCTCA
LOC_Os01g16152
Os.115.1.S1_at--1062--10791Chr01:9115146..9115170 (25 bp)
TTGTTTGTTTTCTCATGCAGCATGC
LOC_Os01g16152
Os.115.1.S1_at--360--1531Chr01:9115128..9115152 (25 bp)
AGCATGCATGCTTTTGCTGTAGTAA
LOC_Os01g16152
Os.115.1.S1_at--430--11Chr01:9115103..9115127 (25 bp)
ATAAACGAAAACTCGACTACTCGAG
LOC_Os01g16152
Os.115.1.S1_at--1023--5691Chr01:9115089..9115113 (25 bp)
GACTACTCGAGTATCCATGTAAAGA
LOC_Os01g16152
Os.115.1.S1_at--212--6811Chr01:9115029..9115053 (25 bp)
GTTTTCCTGTTACAAATCAGCTTGC
LOC_Os01g16152
Os.115.1.S1_at--1011--2491Chr01:9114999..9115023 (25 bp)
AACATGTTTGTCAGCATTGACGTGA
LOC_Os01g16152
Os.115.1.S1_at--574--3371Chr01:9114988..9115012 (25 bp)
CAGCATTGACGTGAGCTCTAACTTC
LOC_Os01g16152
Target Sequence 
TCTGGTGCCGAGGTGATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGC
ATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACG
CCCAGAATATTTGTTTTCCTGTTACAAATCAGCTTGCCGGNCAACATGTTTGTCAGCATTGACGTGAGCTCTAACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis