Browse Element(s) Details


Os.54923.1.S1_at

Description gb:AK107112.1
DB_XREF= gi:32992321
TID=Os.54923.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-123-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-123-A07, full insert sequence.
FL= gb:AK107112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2046010/11SRF-type transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20410OsAffx.17086.1.S1_at11/118+12250648..12252321expressed protein
LOC_Os08g20420Os.51876.1.S1_at11/118+12259749..122633281,2-diacylglycerol 3-beta-galactosyltransferase, putative, expressed
LOC_Os08g20440NANA8+12266346..12266780F-box domain containing protein
LOC_Os08g20450NANA8+12267064..12268327hypothetical protein
LOC_Os08g20460Os.54923.1.S1_at10/118+12270853..12271407SRF-type transcription factor family protein
LOC_Os08g20470NANA8+12274519..12275040retrotransposon protein, putative, unclassified
LOC_Os08g20480OsAffx.29288.1.S1_at10/118+12278656..12286661F-box domain containing protein
LOC_Os08g20486OsAffx.5882.1.S1_at11/118+12286994..12293822transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54923.1.S1_at--947--5271Chr08:12268736..12268760 (25 bp)
GAATGGGCCAACTATCGGAATAAGC
NONE
Os.54923.1.S1_at--906--911Chr08:12270896..12270920 (25 bp)
AGGCTCGTGATGTATGCTTCTCCAA
LOC_Os08g20460
Os.54923.1.S1_at--438--2671Chr08:12270919..12270943 (25 bp)
AAGCGCCGCCAGGTTGTAATCAAGA
LOC_Os08g20460
Os.54923.1.S1_at--838--5291Chr08:12270942..12270966 (25 bp)
GAAGGCTAACGAACTCAGCATATTA
LOC_Os08g20460
Os.54923.1.S1_at--132--8591Chr08:12271005..12271029 (25 bp)
TGGTAAGCCCTTTTTCTTTGGCTGC
LOC_Os08g20460
Os.54923.1.S1_at--374--3731Chr08:12271031..12271055 (25 bp)
CTACTGTTCAAGCTGTCACTCGTCG
LOC_Os08g20460
Os.54923.1.S1_at--590--1991Chr08:12271048..12271072 (25 bp)
ACTCGTCGCTTACTTGGTGTGGGTC
LOC_Os08g20460
Os.54923.1.S1_at--919--7451Chr08:12271064..12271088 (25 bp)
GTGTGGGTCCTAGTAACCCTACCAT
LOC_Os08g20460
Os.54923.1.S1_at--502--5671Chr08:12271117..12271141 (25 bp)
GACATAGTGCATGAGCTCAATCTGA
LOC_Os08g20460
Os.54923.1.S1_at--836--6191Chr08:12271249..12271273 (25 bp)
GAGGCATTCGACAGTAACCTCAATG
LOC_Os08g20460
Os.54923.1.S1_at--108--8931Chr08:12271329..12271353 (25 bp)
TGAGCCCCAGACTCAGATGAGCGTG
LOC_Os08g20460
Target Sequence 
GAATGGGCCAACTATCGGAATAAGCATCAACACGCTGATGAGGCCATGAAGGCTCAGGTGATAGTGAAGGGTAAGCAGCC
ATGAGAAGGGGAAAAGTTAAGATCAAGCCCATTGCAAATAGAAAGGCTCGTGATGTATGCTTCTCCAAGCGCCGCCAGGT
TGTAATCAAGAAGGCTAACGAACTCAGCATATTATGTGGTGTCAATGTTGCTGTTGCTGTGCTCTCACCTGCTGGTAAGC
CCTTTTTCTTTGGCTGCCCTACTGTTCAAGCTGTCACTCGTCGCTTACTTGGTGTGGGTCCTAGTAACCCTACCATGGGT
GATGGGGGCAATGGTGATGAGACTGACATAGTGCATGAGCTCAATCTGAAGTACCAGAAGTTGCAACAAGAGAATGAAGT
GGAGAAGAAGAAAAACCAGCGTGGTCAGGATGTGAGGCTAGCTAGTGATGTAAATGCATTGGGGCTGCATGAGTTGGAGG
CATTCGACAGTAACCTCAATGTAATAGATGACATTGTCGATTCAAATGATGTGGTTAAGAATGCCAAGCAAACAGCTGAG
CCCCAGACTCAGATGAGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis