Browse Element(s) Details


OsAffx.17086.1.S1_at

Description tigr:9636.m02013
TID=OsAffx.17086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2041011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20359NANA8+12224834..12228506retrotransposon protein, putative, unclassified
LOC_Os08g20370Os.27691.2.S1_x_at1/118+12230462..12236622retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20379NANA8+12237475..12237927retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20390NANA8+12239717..12240505retrotransposon protein, putative, unclassified
LOC_Os08g20400OsAffx.5881.1.S1_s_at11/118+12242237..12243021Adenylate cyclase family protein, expressed
LOC_Os08g20410OsAffx.17086.1.S1_at11/118+12250648..12252321expressed protein
LOC_Os08g20420Os.51876.1.S1_at11/118+12259749..122633281,2-diacylglycerol 3-beta-galactosyltransferase, putative, expressed
LOC_Os08g20440NANA8+12266346..12266780F-box domain containing protein
LOC_Os08g20450NANA8+12267064..12268327hypothetical protein
LOC_Os08g20460Os.54923.1.S1_at10/118+12270853..12271407SRF-type transcription factor family protein
LOC_Os08g20470NANA8+12274519..12275040retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17086.1.S1_at--1033--551Chr08:12252245..12252269 (25 bp)
ATCCTTCTCACACTTACACAGTTAG
LOC_Os08g20410
OsAffx.17086.1.S1_at--975--9831Chr08:12252231..12252255 (25 bp)
TACACAGTTAGACCTAGCCAAATAG
LOC_Os08g20410
OsAffx.17086.1.S1_at--63--6671Chr08:12252204..12252228 (25 bp)
GTTGAACTGCGTCAAGAGCTTGCTA
LOC_Os08g20410
OsAffx.17086.1.S1_at--948--4831Chr08:12252183..12252207 (25 bp)
GCTAATTTCAAGCATCAGCGACAAG
LOC_Os08g20410
OsAffx.17086.1.S1_at--250--3391Chr08:12252168..12252192 (25 bp)
CAGCGACAAGAGGATTGCCAATCAA
LOC_Os08g20410
OsAffx.17086.1.S1_at--873--9731Chr08:12252147..12252171 (25 bp)
TCAATACAAAATGCTCTATCTGAGT
LOC_Os08g20410
OsAffx.17086.1.S1_at--572--2971Chr08:12252002..12252026 (25 bp)
AATGGATCTGCAAGTACACCTCCAC
LOC_Os08g20410
OsAffx.17086.1.S1_at--1056--9851Chr08:12251988..12252012 (25 bp)
TACACCTCCACCTCAGATCAATTTG
LOC_Os08g20410
OsAffx.17086.1.S1_at--1129--6451Chr08:12251973..12251997 (25 bp)
GATCAATTTGGCTGCATTATTTCCT
LOC_Os08g20410
OsAffx.17086.1.S1_at--608--10411Chr08:12251957..12251981 (25 bp)
TTATTTCCTAGCCATTCATCTCCAA
LOC_Os08g20410
OsAffx.17086.1.S1_at--646--3551Chr08:12251823..12251965 (25 bp)
CATCTCCAACTACTCAGCAGAATAC
LOC_Os08g20410
Target Sequence 
ATCCTTCTCACACTTACACAGTTAGACCTAGCCAAATAGAGGTTGAACTGCGTCAAGAGCTTGCTAATTTCAAGCATCAG
CGACAAGAGGATTGCCAATCAATACAAAATGCTCTATCTGAGTTCAATAATCAGACAAAGGAGTATATGATTAATGGATC
TGCAAGTACACCTCCACCTCAGATCAATTTGGCTGCATTATTTCCTAGCCATTCATCTCCAACTACTCAGCAGAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis