Browse Element(s) Details


OsAffx.5881.1.S1_s_at

Description tigr:9636.m02012
TID=OsAffx.5881.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Adenylate cyclase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2040011/11Adenylate cyclase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20350NANA8+12213667..12220192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20359NANA8+12224834..12228506retrotransposon protein, putative, unclassified
LOC_Os08g20370Os.27691.2.S1_x_at1/118+12230462..12236622retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20379NANA8+12237475..12237927retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20390NANA8+12239717..12240505retrotransposon protein, putative, unclassified
LOC_Os08g20400OsAffx.5881.1.S1_s_at11/118+12242237..12243021Adenylate cyclase family protein, expressed
LOC_Os08g20410OsAffx.17086.1.S1_at11/118+12250648..12252321expressed protein
LOC_Os08g20420Os.51876.1.S1_at11/118+12259749..122633281,2-diacylglycerol 3-beta-galactosyltransferase, putative, expressed
LOC_Os08g20440NANA8+12266346..12266780F-box domain containing protein
LOC_Os08g20450NANA8+12267064..12268327hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5881.1.S1_s_at--394--9351Chr08:12242559..12242583 (25 bp)
TCGAGTCCCCGATCATTCGGCTCGT
LOC_Os08g20400
OsAffx.5881.1.S1_s_at--439--6431Chr08:12242569..12242593 (25 bp)
GATCATTCGGCTCGTCTCCGAAGAG
LOC_Os08g20400
OsAffx.5881.1.S1_s_at--936--71Chr08:12242573..12242597 (25 bp)
ATTCGGCTCGTCTCCGAAGAGTACG
LOC_Os08g20400
OsAffx.5881.1.S1_s_at--480--3771Chr08:12242579..12242603 (25 bp)
CTCGTCTCCGAAGAGTACGGCGTCG
LOC_Os08g20400
OsAffx.5881.1.S1_s_at--951--2711Chr08:12242774..12242798 (25 bp)
AAGCAGGTCCTCGAGCGGTTGCTCA
LOC_Os08g20400
OsAffx.5881.1.S1_s_at--521--7251Chr08:12242780..12242804 (25 bp)
GTCCTCGAGCGGTTGCTCACCGTGG
LOC_Os08g20400
OsAffx.5881.1.S1_s_at--314--8411Chr08:12242803..12242827 (25 bp)
GGCCGGCGTGCCGTATGAGTATTCC
LOC_Os08g20400
OsAffx.5881.1.S1_s_at--1105--8331Chr08:12242807..12242831 (25 bp)
GGCGTGCCGTATGAGTATTCCCGGA
LOC_Os08g20400
OsAffx.5881.1.S1_s_at--1150--4211Chr08:12242813..12242837 (25 bp)
CCGTATGAGTATTCCCGGAGCAATA
LOC_Os08g20400
OsAffx.5881.1.S1_s_at--730--8891Chr08:12242818..12242842 (25 bp)
TGAGTATTCCCGGAGCAATAAGTTT
LOC_Os08g20400
OsAffx.5881.1.S1_s_at--110--6691Chr08:12242821..12242845 (25 bp)
GTATTCCCGGAGCAATAAGTTTGCC
LOC_Os08g20400
Target Sequence 
TCGAGTCCCCGATCATTCGGCTCGTCTCCGAAGAGTACGGCGTCGGCGGGGACGCCGCGCCGTTCGTCTGCCTCGGCGGG
TTCCGGAACACCCGCGCCGTGTACCAGCTGGAGGAGGGCGACACCCTCGGGCTCGTCGTGGAGCTCGACGAGACGCGCTT
CGACTTTGGTACGAACTACGAGCTGGAGTGTGAAACGGCGGAGCCCGAGCAGGCCAAGCAGGTCCTCGAGCGGTTGCTCA
CCGTGGCCGGCGTGCCGTATGAGTATTCCCGGAGCAATAAGTTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5881.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis