Browse Element(s) Details


Os.51876.1.S1_at

Description gb:AK064148.1
DB_XREF= gi:32974166
TID=Os.51876.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-C09, full insert sequence.
FL= gb:AK064148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2042011/111,2-diacylglycerol 3-beta-galactosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20370Os.27691.2.S1_x_at1/118+12230462..12236622retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20379NANA8+12237475..12237927retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20390NANA8+12239717..12240505retrotransposon protein, putative, unclassified
LOC_Os08g20400OsAffx.5881.1.S1_s_at11/118+12242237..12243021Adenylate cyclase family protein, expressed
LOC_Os08g20410OsAffx.17086.1.S1_at11/118+12250648..12252321expressed protein
LOC_Os08g20420Os.51876.1.S1_at11/118+12259749..122633281,2-diacylglycerol 3-beta-galactosyltransferase, putative, expressed
LOC_Os08g20440NANA8+12266346..12266780F-box domain containing protein
LOC_Os08g20450NANA8+12267064..12268327hypothetical protein
LOC_Os08g20460Os.54923.1.S1_at10/118+12270853..12271407SRF-type transcription factor family protein
LOC_Os08g20470NANA8+12274519..12275040retrotransposon protein, putative, unclassified
LOC_Os08g20480OsAffx.29288.1.S1_at10/118+12278656..12286661F-box domain containing protein
LOC_Os08g20486OsAffx.5882.1.S1_at11/118+12286994..12293822transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009247biological_processglycolipid biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0019375biological_processgalactolipid biosynthesis
GO:0009706cellular_componentchloroplast inner membrane
GO:0009707cellular_componentchloroplast outer membrane
GO:0009941cellular_componentchloroplast envelope
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035250molecular_functionUDP-galactosyltransferase activity
GO:0046509molecular_function1,2-diacylglycerol 3-beta-galactosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51876.1.S1_at--169--951Chr08:12261421..12261445 (25 bp)
AGGACTCCCAATTATTCTCAACGAC
LOC_Os08g20420
Os.51876.1.S1_at--403--10211Chr08:12261433..12261457 (25 bp)
TATTCTCAACGACTTCATACCTGGA
LOC_Os08g20420
Os.51876.1.S1_at--653--7611Chr08:12262806..12262830 (25 bp)
GGGAATGTGCCTTACGTCGTGGACA
LOC_Os08g20420
Os.51876.1.S1_at--625--8671Chr08:12262841..12262865 (25 bp)
TGTGTTCTCCAAGGACCCGAGGGAA
LOC_Os08g20420
Os.51876.1.S1_at--1134--2111Chr08:12262874..12262898 (25 bp)
ACAGGTTGCCAGATGGTTCACCACA
LOC_Os08g20420
Os.51876.1.S1_at--114--6051Chr08:12262916..12262940 (25 bp)
GAGATACTCCCTCAACGCGCTGAAG
LOC_Os08g20420
Os.51876.1.S1_at--740--9991Chr08:12262942..12262966 (25 bp)
TAGCGCAGCCAGAAGCCGTGTTCGA
LOC_Os08g20420
Os.51876.1.S1_at--206--7991Chr08:12263079..12263103 (25 bp)
GGATGTACTATGCTATGCTCTGCAA
LOC_Os08g20420
Os.51876.1.S1_at--1115--3271Chr08:12263101..12263125 (25 bp)
CAAACATGCTTTGCCTCGGAAGGTT
LOC_Os08g20420
Os.51876.1.S1_at--233--2911Chr08:12263120..12263144 (25 bp)
AAGGTTGGTCCGCTTGCTGAAGAAC
LOC_Os08g20420
Os.51876.1.S1_at--334--1311Chr08:12263213..12263237 (25 bp)
AGATGTTGTCTAACTGGCCTGCTGC
LOC_Os08g20420
Target Sequence 
AGGACTCCCAATTATTCTCAACGACTTCATACCTGGACAGGAANTCGGGAATGTGCCTTACGTCGTGGACAATGGTGCCG
GTGTGTTCTCCAAGGACCCGAGGGAANCCGCGAGACAGGTTGCCAGATGGTTCACCACACACACNAACGAGCTCCGGAGA
TACTCCCTCAACGCGCTGAAGCTAGCGCAGCCAGAAGCCGTGTTCGACATCGTGAAGGACATCCACAAGCTCCAGCAGCA
GCCTGCCACGGTGACGCGGATCCCTTACTCCCTGACCTCATCGTTNTCATACAGCATATGAAAAACCATCAAGGTTACAG
GATGTACTATGCTATGCTCTGCAAACATGCTTTGCCTCGGAAGGTTGGTCCGCTTGCTGAAGAACTTGTACATACTGAAT
TGGATTTGTTCGTTTGTCCNAATGTGTAAATGCNATAAGAACAGATGAACTGNAAGATGTTGTCTAACTGGCCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis