Browse Element(s) Details


Os.50232.2.S1_x_at

Description gb:AK120244.1
DB_XREF= gi:37989867
TID=Os.50232.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044I07, full insert sequence.
FL= gb:AK120244.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g205208/11AT hook motif-containing protein, putative
LOC_Os07g100706/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20480OsAffx.29288.1.S1_at10/118+12278656..12286661F-box domain containing protein
LOC_Os08g20486OsAffx.5882.1.S1_at11/118+12286994..12293822transposon protein, putative, unclassified, expressed
LOC_Os08g20492OsAffx.29288.2.S1_at10/118+12297813..12300143F-box domain containing protein
LOC_Os08g20500Os.32425.1.S1_s_at11/118+12301496..12304733expressed protein
LOC_Os08g20520Os.50232.1.S1_x_at11/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20520Os.50232.2.S1_x_at8/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20520Os.51075.1.S1_x_at6/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20544Os.16867.1.S1_at11/118+12325204..12335841CLB1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50232.2.S1_x_at--388--4913Chr08:12307838..12307862 (25 bp)
GCTTCCAGATCCATCCATTGATCGA
LOC_Os08g20520
Os.50232.2.S1_x_at--136--9133Chr08:12307874..12307898 (25 bp)
TGCTGTTGCGGCATTCATGATGCAT
LOC_Os08g20520
Os.50232.2.S1_x_at--14--5853Chr08:12307900..12307924 (25 bp)
GACCTTGTGGTGATGCAAATCCGCA
LOC_Os08g20520
Os.50232.2.S1_x_at--824--4932Chr08:12307922..12307946 (25 bp)
GCATTGTTCATGCATGGTTGACGGT
LOC_Os08g20520
Os.50232.2.S1_x_at--580--2451NONE
AACAATCCTGCCAAATGGCCGTGTA
NONE
Os.50232.2.S1_x_at--945--3971NONE
CGTGTAAGGTATGCTCGGCCAAAAA
NONE
Os.50232.2.S1_x_at--1084--6692Chr07:5380796..5380820 (25 bp)
GTTCGAGGGTTGGTCTCAAGCGCAA
LOC_Os07g10070
Os.50232.2.S1_x_at--345--5172Chr08:12308218..12308242 (25 bp)
GCAAGCGGGCATGTGCTGGAACTAA
LOC_Os08g20520
Os.50232.2.S1_x_at--18--9933Chr08:12308365..12308387 (23 bp)
TACTGATCCTGCTATTGAGCGTCCA
LOC_Os08g20520
Os.50232.2.S1_x_at--1108--5873Chr08:12308381..12308407 (25 bp)
GAGCGTCCATGTACATATGCCATTA
LOC_Os08g20520
Os.50232.2.S1_x_at--352--492Chr08:12308439..12308463 (25 bp)
ATCTGGAACAGATCTTGGATAACCC
LOC_Os08g20520
Target Sequence 
GCTTCCAGATCCATCCATTGATCGAGTTGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAA
ATCCGCATTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTATGAGAAAACAACAATCCTG
CCAAATGGCCGTGTAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCGAAAAATGGAATTTCTCTTGATAATTGGCA
TGTTGTCCCCCACAACGTCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGG
AAAAGTATCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCGGGCATGTGCTGGA
ACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTGCTTTAGTTTGAGAT
TCATTATACTGATCCTGCTATTGAGCGTCCATGTACATATGCCATTAGAGAATAATGTTACATTCACAGAGGATGATAAT
CTGGAACAGATCTTGGATAACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50232.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis