Browse Element(s) Details


Os.32425.1.S1_s_at

Description gb:CF296703
DB_XREF= gi:33665736
DB_XREF=30DGS--07-D05.g1
CLONE=30DGS--07-D05
TID=Os.32425.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.32425 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T01193 (A.thaliana) T01193 reverse transcriptase homolog F21E10.8 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2050011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20480OsAffx.29288.1.S1_at10/118+12278656..12286661F-box domain containing protein
LOC_Os08g20486OsAffx.5882.1.S1_at11/118+12286994..12293822transposon protein, putative, unclassified, expressed
LOC_Os08g20492OsAffx.29288.2.S1_at10/118+12297813..12300143F-box domain containing protein
LOC_Os08g20500Os.32425.1.S1_s_at11/118+12301496..12304733expressed protein
LOC_Os08g20520Os.50232.1.S1_x_at11/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20520Os.50232.2.S1_x_at8/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20520Os.51075.1.S1_x_at6/118+12306498..12310407AT hook motif-containing protein, putative
LOC_Os08g20544Os.16867.1.S1_at11/118+12325204..12335841CLB1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32425.1.S1_s_at--753--5911Chr08:12304285..12304309 (25 bp)
GAGCTTTCTCTAGGAACGATAGCCA
LOC_Os08g20500
Os.32425.1.S1_s_at--861--5011Chr08:12304323..12304347 (25 bp)
GCAGTCCTACGAGATGTTGATGGGA
LOC_Os08g20500
Os.32425.1.S1_s_at--210--8431Chr08:12304359..12304383 (25 bp)
GGCCGGGCTAGATGGCATCCTCATG
LOC_Os08g20500
Os.32425.1.S1_s_at--52--4291Chr08:12304377..12304401 (25 bp)
CCTCATGGCCTGGATGCTTTGATGA
LOC_Os08g20500
Os.32425.1.S1_s_at--694--10651Chr08:12304411..12304435 (25 bp)
TTGCCTGCCGGGATGGGATACAACT
LOC_Os08g20500
Os.32425.1.S1_s_at--68--3251Chr08:12304431..12304455 (25 bp)
CAACTTGCCCGGGAGAAAGGAGTCT
LOC_Os08g20500
Os.32425.1.S1_s_at--603--5991Chr08:12304470..12304494 (25 bp)
GAGACGGACTGCCAAGAGCTAACCA
LOC_Os08g20500
Os.32425.1.S1_s_at--86--7731Chr08:12304508..12304532 (25 bp)
GGGTGGCTCTCAAAGATCGCATGTT
LOC_Os08g20500
Os.32425.1.S1_s_at--819--4991Chr08:12304526..12304550 (25 bp)
GCATGTTGCGTCGATTATCAGTGAT
LOC_Os08g20500
Os.32425.1.S1_s_at--163--1111Chr08:12304545..12304569 (25 bp)
AGTGATGCTATAGAGCTTAGCTCCA
LOC_Os08g20500
Os.32425.1.S1_s_at--442--151Chr08:12304628..12304652 (25 bp)
ATTAGCGAAGCAAGTCACGGCTGAT
LOC_Os08g20500
Target Sequence 
GAGCTTTCTCTAGGAACGATAGCCAGGGAGCAACAGGGGCAGTCCTACGAGATGTTGATGGGAGGTTCAAAGGCGGCCGG
GCTAGATGGCATCCTCATGGCCTGGATGCTTTGATGATGGAGGCCCTTGCCTGCCGGGATGGGATACAACTTGCCCGGGA
GAAAGGAGTCTTAAGAATCCAGGTGGAGACGGACTGCCAAGAGCTAACCAAACTGTGGAAGCNGGGTGGCTCTCAAAGAT
CGCATGTTGCGTCGATTATCAGTGATGCTATAGAGCTTAGCTCCAGNTTTCATGNNTTNACTTTACTGTACACCCCCCGA
TCTTGCAATCATGTAGNTCATGTATTAGCGAAGCAAGTCACGGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32425.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis