Browse Element(s) Details


OsAffx.21997.5.S1_at

Description tigr:9636.m04174
TID=OsAffx.21997.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4115011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41090Os.17125.1.S1_at11/118+25838921..25842038Peroxidase family protein, expressed
LOC_Os08g41100Os.9173.1.S1_at11/118+25842624..25844598Chitinase class I family protein, expressed
LOC_Os08g41110Os.17116.1.S1_at11/118+25846641..25851174Chaperone protein dnaJ 10, putative, expressed
LOC_Os08g41120NANA8+25851411..25852436BTB/POZ domain containing protein
LOC_Os08g41130NANA8+25855367..25858078transposon protein, putative, Mutator sub-class
LOC_Os08g41140OsAffx.22940.2.S1_s_at11/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.1.S1_s_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_x_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.3.S1_x_at9/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.3.S1_x_at8/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.18.S1_x_at6/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.31552.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41150OsAffx.21997.5.S1_at11/118+25864777..25865856BTB/POZ domain containing protein
LOC_Os08g41150OsAffx.21997.3.S1_x_at1/118+25864777..25865856BTB/POZ domain containing protein
LOC_Os08g41160Os.47463.1.S1_x_at4/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41160Os.14491.2.S1_x_at3/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41170OsAffx.21997.4.S1_at11/118+25880693..25881717BTB/POZ domain containing protein
LOC_Os08g41180OsAffx.21997.3.S1_x_at1/118+25882504..25883469BTB/POZ domain containing protein
LOC_Os08g41190OsAffx.6101.1.S1_at11/118+25887421..25888506BTB/POZ domain containing protein
LOC_Os08g41200OsAffx.17450.1.S1_at11/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41200OsAffx.6101.1.S1_at1/118+25890021..25890747speckle-type POZ protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21997.5.S1_at--781--3931Chr08:25865069..25865093 (25 bp)
CGGCGAGCACGAGCGATCATCTGCT
LOC_Os08g41150
OsAffx.21997.5.S1_at--1129--5091Chr08:25865063..25865087 (25 bp)
GCACGAGCGATCATCTGCTTCATCA
LOC_Os08g41150
OsAffx.21997.5.S1_at--323--471Chr08:25865051..25865075 (25 bp)
ATCTGCTTCATCATCAGCGTTTGCT
LOC_Os08g41150
OsAffx.21997.5.S1_at--702--9071Chr08:25865048..25865072 (25 bp)
TGCTTCATCATCAGCGTTTGCTCGC
LOC_Os08g41150
OsAffx.21997.5.S1_at--48--1871Chr08:25864938..25864962 (25 bp)
ACGACGCTGGGCTGCGCCGAGATGC
LOC_Os08g41150
OsAffx.21997.5.S1_at--908--1451Chr08:25864853..25864877 (25 bp)
AGAAGGTAGTGGTCACCGACGGCTA
LOC_Os08g41150
OsAffx.21997.5.S1_at--620--3351Chr08:25864840..25864864 (25 bp)
CACCGACGGCTACTTTCTTCTTATA
LOC_Os08g41150
OsAffx.21997.5.S1_at--999--5731Chr08:25864836..25864860 (25 bp)
GACGGCTACTTTCTTCTTATACAGA
LOC_Os08g41150
OsAffx.21997.5.S1_at--391--8311Chr08:25864833..25864857 (25 bp)
GGCTACTTTCTTCTTATACAGAATT
LOC_Os08g41150
OsAffx.21997.5.S1_at--1029--3391Chr08:25864815..25864839 (25 bp)
CAGAATTTTCCCTTAGTTATCGAAG
LOC_Os08g41150
OsAffx.21997.5.S1_at--838--151Chr08:25864811..25864835 (25 bp)
ATTTTCCCTTAGTTATCGAAGAGAT
LOC_Os08g41150
Target Sequence 
CGGCGAGCACGAGCGATCATCTGCTTCATCATCAGCGTTTGCTCGCGGCGGCGGACAGGTACGCGCTGGACGGGCTGAAG
CTGATGTGCGCCCAGAAGCTGTGGGAGAGCGTGTCAGTGGAGACGGTGGCGACGACGCTGGGCTGCGCCGAGATGCACGG
CTGCCCGGAGCTGAAGAGCAAGTGCCTCGACTTCTTCATGGCGGAGAGCAACTTCAAGAAGGTAGTGGTCACCGACGGCT
ACTTTCTTCTTATACAGAATTTTCCCTTAGTTATCGAAGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21997.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis