Browse Element(s) Details


OsAffx.21997.4.S1_at

Description tigr:9636.m04177
TID=OsAffx.21997.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4117011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41130NANA8+25855367..25858078transposon protein, putative, Mutator sub-class
LOC_Os08g41140OsAffx.22940.2.S1_s_at11/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.1.S1_s_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.5.S1_x_at10/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.3.S1_x_at9/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.3.S1_x_at8/118+25858437..25862921hypothetical protein
LOC_Os08g41140Os.35344.18.S1_x_at6/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.31552.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41140OsAffx.22940.2.S1_at1/118+25858437..25862921hypothetical protein
LOC_Os08g41150OsAffx.21997.5.S1_at11/118+25864777..25865856BTB/POZ domain containing protein
LOC_Os08g41150OsAffx.21997.3.S1_x_at1/118+25864777..25865856BTB/POZ domain containing protein
LOC_Os08g41160Os.47463.1.S1_x_at4/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41160Os.14491.2.S1_x_at3/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41170OsAffx.21997.4.S1_at11/118+25880693..25881717BTB/POZ domain containing protein
LOC_Os08g41180OsAffx.21997.3.S1_x_at1/118+25882504..25883469BTB/POZ domain containing protein
LOC_Os08g41190OsAffx.6101.1.S1_at11/118+25887421..25888506BTB/POZ domain containing protein
LOC_Os08g41200OsAffx.17450.1.S1_at11/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41200OsAffx.6101.1.S1_at1/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41210OsAffx.17451.1.S1_at11/118+25891924..25893397expressed protein
LOC_Os08g41220OsAffx.6102.1.S1_at10/118+25895326..25899804BTB/POZ domain containing protein
LOC_Os08g41230OsAffx.17452.1.S1_at11/118+25904090..25906978BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21997.4.S1_at--392--1931Chr08:25881318..25881342 (25 bp)
ACGGTCACATTCGTGTGTGGGTTCA
LOC_Os08g41170
OsAffx.21997.4.S1_at--587--6731Chr08:25881298..25881322 (25 bp)
GTTCATGGTTGTGCGCAACGACGTC
LOC_Os08g41170
OsAffx.21997.4.S1_at--435--5773Chr08:15702800..15702819 (20 bp)
GACGTTTTGCCACCATTGTTAGGTA
NONE
OsAffx.21997.4.S1_at--560--8771Chr08:25880999..25881023 (25 bp)
TGTTAGGTACATCCGACCTGCTTGA
LOC_Os08g41170
OsAffx.21997.4.S1_at--618--5991Chr08:25880889..25880913 (25 bp)
GAGACGGTTGCAACGACTCTGATCT
LOC_Os08g41170
OsAffx.21997.4.S1_at--701--2591Chr08:25880878..25880902 (25 bp)
AACGACTCTGATCTGTGCCGAGTGT
LOC_Os08g41170
OsAffx.21997.4.S1_at--656--7291Chr08:25880864..25880888 (25 bp)
GTGCCGAGTGTACAACTGTCCAGAG
LOC_Os08g41170
OsAffx.21997.4.S1_at--538--6331Chr08:25880829..25880853 (25 bp)
GATGCTTCAATTTCCTCACGGCTGA
LOC_Os08g41170
OsAffx.21997.4.S1_at--837--6131Chr08:25880776..25880800 (25 bp)
GAGGGATACTTTCACCTTGGTCAGA
LOC_Os08g41170
OsAffx.21997.4.S1_at--657--8571Chr08:25880759..25880783 (25 bp)
TGGTCAGAGTTTCCCGTTGGTTATT
LOC_Os08g41170
OsAffx.21997.4.S1_at--852--1611Chr08:25880723..25880747 (25 bp)
AGCGAGGATTGAAACTTGCGACTTC
LOC_Os08g41170
Target Sequence 
ACGGTCACATTCGTGTGTGGGTTCATGGTTGTGCGCAACGACGTCCACGGCAATCCTATCCCCGTGCCGCCCCCCAATCT
GGGTGCCCAACTCGGAGCTATGGGGGGCAGCGCCGACGGCTCGGACGCGTCGTTCGCCGTTGGCGGCGAGACGTTCCACG
CGCACCGGGCCGTGCTCGCCGCGCGCTCGCCGGTGTTCAGGGCGCAGCTCCTCGGCTCCATGGCCGAGGCCACCATGCCG
TGCGTCACGCTGCACGACATCGAGCCGGCGACGTTCAAAGCTCTGCTACACTTCGTGTACACGGACGTTTTGCCACCATT
GTTAGGTACATCCGACCTGCTTGAGCCGCTTCTCGCAGCGGCAAACAGAGACGGTTGCAACGACTCTGATCTGTGCCGAG
TGTACAACTGTCCAGAGCTGAAGAGCAGATGCTTCAATTTCCTCACGGCTGACAGCAATTTCAAGAAGGTAGTGGTTACC
GAGGGATACTTTCACCTTGGTCAGAGTTTCCCGTTGGTTATTGAGGATATAAAAGCGAGGATTGAAACTTGCGACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21997.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis