Browse Element(s) Details


OsAffx.17451.1.S1_at

Description tigr:9636.m04181
TID=OsAffx.17451.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4121011/11expressed protein
LOC_Os08g450804/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41160Os.47463.1.S1_x_at4/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41160Os.14491.2.S1_x_at3/118+25866293..25876009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g41170OsAffx.21997.4.S1_at11/118+25880693..25881717BTB/POZ domain containing protein
LOC_Os08g41180OsAffx.21997.3.S1_x_at1/118+25882504..25883469BTB/POZ domain containing protein
LOC_Os08g41190OsAffx.6101.1.S1_at11/118+25887421..25888506BTB/POZ domain containing protein
LOC_Os08g41200OsAffx.17450.1.S1_at11/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41200OsAffx.6101.1.S1_at1/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41210OsAffx.17451.1.S1_at11/118+25891924..25893397expressed protein
LOC_Os08g41220OsAffx.6102.1.S1_at10/118+25895326..25899804BTB/POZ domain containing protein
LOC_Os08g41230OsAffx.17452.1.S1_at11/118+25904090..25906978BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_x_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41250Os.12227.1.S1_at11/118+25913926..25916839Signal recognition particle receptor beta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17451.1.S1_at--443--4771Chr08:25891966..25891990 (25 bp)
GCTGCTTCTTCGCTGGCTTGCAAAT
LOC_Os08g41210
OsAffx.17451.1.S1_at--1098--10552Chr08:25891971..25891995 (25 bp)
TTCTTCGCTGGCTTGCAAATTGCAA
LOC_Os08g41210
OsAffx.17451.1.S1_at--1154--9311Chr08:25892140..25892164 (25 bp)
TCCCAGCTCCAGTCTGAGGGACGCA
LOC_Os08g41210
OsAffx.17451.1.S1_at--241--1591Chr08:25892144..25892168 (25 bp)
AGCTCCAGTCTGAGGGACGCACCAG
LOC_Os08g41210
OsAffx.17451.1.S1_at--1010--9211Chr08:25892147..25892171 (25 bp)
TCCAGTCTGAGGGACGCACCAGGAT
LOC_Os08g41210
OsAffx.17451.1.S1_at--99--8891Chr08:25892154..25892178 (25 bp)
TGAGGGACGCACCAGGATCGTCAAC
LOC_Os08g41210
OsAffx.17451.1.S1_at--670--7572Chr08:25893310..25893334 (25 bp)
GGGCTCAAGCATGGCATTTGGGATC
LOC_Os08g41210
OsAffx.17451.1.S1_at--786--4832Chr08:25893312..25893336 (25 bp)
GCTCAAGCATGGCATTTGGGATCTT
LOC_Os08g41210
OsAffx.17451.1.S1_at--981--3232Chr08:25893315..25893339 (25 bp)
CAAGCATGGCATTTGGGATCTTAGT
LOC_Os08g41210
OsAffx.17451.1.S1_at--640--3492Chr08:25893319..25893343 (25 bp)
CATGGCATTTGGGATCTTAGTAGAA
LOC_Os08g41210
OsAffx.17451.1.S1_at--577--1411Chr08:25893343..25893367 (25 bp)
AGAAATCGATCTTCAAATGTTTGCA
LOC_Os08g41210
Target Sequence 
GCTGCTTCTTCGCTGGCTTGCAAATTGCAATCGAAGAAGAAGAAGAGGAAGACGAAGAGGAGGATGGATGGCGGCGGCGG
CAACTGGAGGCCCACCCAGGGGGCCGACCCCGCCGCCGCTGGGGGCATCGATCTCAGCGCCCCCGCCCCCGCCCCCGCCG
GCGGCGACTGGCGCTCCCAGCTCCAGTCTGAGGGACGCACCAGGATCGTCAACAAGATACTGGAGACTCTGAAGAAGCAT
CTACCAGTATCAGGGCCTGAGGGGCTGAATGAACTTCAAAAGTTAGCAGTGCGATTTGAAGAGAAAATCTATACTGGAGC
CACCAGCCGGTTGTGGGGCTCAAGCATGGCATTTGGGATCTTAGTAGAAGAAATCGATCTTCAAATGTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis