Browse Element(s) Details


Os.6129.1.S1_at

Description gb:AK107024.1
DB_XREF= gi:32992233
TID=Os.6129.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-A04, full insert sequence.
FL= gb:AK107024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4399011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43960Os.23064.1.S1_at9/1111+26043095..26045690ADP,ATP carrier protein 2, mitochondrial precursor, putative, expressed
LOC_Os11g43970Os.26546.1.S1_at11/1111+26046155..26052730AAA-type ATPase family protein, putative, expressed
LOC_Os11g43980Os.11563.1.S1_at11/1111+26065476..26067337Peroxidase 1 precursor, putative, expressed
LOC_Os11g43990Os.6129.1.S1_at11/1111+26070342..26075297expressed protein
LOC_Os11g44000OsAffx.7402.1.S1_at11/1111+26076954..26079793hypothetical protein
LOC_Os11g44000OsAffx.31466.1.S1_x_at1/1111+26076954..26079793hypothetical protein
LOC_Os11g44014OsAffx.28903.1.S1_x_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.7403.1.S1_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.28903.2.S1_x_at1/1111+26080547..26092483helicase, putative
LOC_Os11g44014Os.31529.1.S1_at1/1111+26080547..26092483helicase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6129.1.S1_at--1061--1751Chr11:26070819..26070843 (25 bp)
ACCTCCTGCGCCGTAATGTGATGTG
LOC_Os11g43990
Os.6129.1.S1_at--1034--5791Chr11:26070756..26070780 (25 bp)
GACGCAGCCTGTGCTTGATCCATGA
LOC_Os11g43990
Os.6129.1.S1_at--976--471Chr11:26070725..26070749 (25 bp)
ATCTGCATGATTCCTCGAACCGATC
LOC_Os11g43990
Os.6129.1.S1_at--16--6311Chr11:26070700..26070724 (25 bp)
GATGAGGCTTTATTTTTCTCTCGCG
LOC_Os11g43990
Os.6129.1.S1_at--729--9431Chr11:26070671..26070695 (25 bp)
TCGGGTGCCCGGAAATCCATGGATT
LOC_Os11g43990
Os.6129.1.S1_at--907--4071Chr11:26070609..26070633 (25 bp)
CGACATCACGCATCCATTTGGGTAG
LOC_Os11g43990
Os.6129.1.S1_at--527--6751Chr11:26070545..26070569 (25 bp)
GTGTAATTTTTTCGCCGGACGCATG
LOC_Os11g43990
Os.6129.1.S1_at--834--3951Chr11:26070530..26070554 (25 bp)
CGGACGCATGTCTGGTGTTGTTAAT
LOC_Os11g43990
Os.6129.1.S1_at--22--6651Chr11:26070514..26070538 (25 bp)
GTTGTTAATGACTGTAGGCTCCTAT
LOC_Os11g43990
Os.6129.1.S1_at--5--2132Chr04:26518978..26518999 (22 bp)
ACAGGACAGTATCCCGTTCGGATGA
NONE
Os.6129.1.S1_at--10--3551Chr11:26070346..26070370 (25 bp)
CATCCGTACTGTCGTGTAACTTTCA
LOC_Os11g43990
Target Sequence 
ACCTCCTGCGCCGTAATGTGATGTGCAGAGCAGAGGAAGCCATGAATNTAAGCTCCGGCAGAGGACGCAGCCTGTGCTTG
ATCCATGACCCTGCATCTGCATGATTCCTCGAACCGATCGATGAGGCTTTATTTTTCTCTCGCGTATTTCGGGTGCCCGG
AAATCCATGGATTATGTGATGGTTCTTACATTACGCATGTGCATTAATCGCGACATCACGCATCCATTTGGGTAGTAGCA
TCTCGGGATTGTAATGTTGCGTGTTTGGATGTCCGTGTAATTTTTTCGCCGGACGCATGTCTGGTGTTGTTAATGACTGT
AGGCTCCTATAGTAGCAAATGACAACAAGTTTTTTTTACTAAAGTATGTACTATATGCCTATACGATTAATATCATTAAA
CTTTAATGCTACAGGACAGTATCCCGTTCGGATGATACTCGAAAATATAGGCGATACCTCATATGTATCATCCCATCCGT
ACTGTCGTGTAACTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis