Browse Element(s) Details


Os.11563.1.S1_at

Description gb:AK108713.1
DB_XREF= gi:32993922
TID=Os.11563.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-B05, full insert sequence.
FL= gb:AK108713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4398011/11Peroxidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43950Os.27044.1.A1_at11/1111+26036058..26042520expressed protein
LOC_Os11g43960Os.23064.1.S1_at9/1111+26043095..26045690ADP,ATP carrier protein 2, mitochondrial precursor, putative, expressed
LOC_Os11g43970Os.26546.1.S1_at11/1111+26046155..26052730AAA-type ATPase family protein, putative, expressed
LOC_Os11g43980Os.11563.1.S1_at11/1111+26065476..26067337Peroxidase 1 precursor, putative, expressed
LOC_Os11g43990Os.6129.1.S1_at11/1111+26070342..26075297expressed protein
LOC_Os11g44000OsAffx.7402.1.S1_at11/1111+26076954..26079793hypothetical protein
LOC_Os11g44000OsAffx.31466.1.S1_x_at1/1111+26076954..26079793hypothetical protein
LOC_Os11g44014OsAffx.28903.1.S1_x_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.7403.1.S1_at11/1111+26080547..26092483helicase, putative
LOC_Os11g44014OsAffx.28903.2.S1_x_at1/1111+26080547..26092483helicase, putative
LOC_Os11g44014Os.31529.1.S1_at1/1111+26080547..26092483helicase, putative

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11563.1.S1_at--760--4231Chr11:26066762..26066786 (25 bp)
GCCTTGGACCGGAGTTATCTAGCGC
LOC_Os11g43980
Os.11563.1.S1_at--951--8091Chr11:26066767..26066791 (25 bp)
GGACCGGAGTTATCTAGCGCGGCTC
LOC_Os11g43980
Os.11563.1.S1_at--1044--1051Chr11:26066999..26067023 (25 bp)
AGGGATTTTGCCGAGTCGATGGTCA
LOC_Os11g43980
Os.11563.1.S1_at--1119--10271Chr11:26067005..26067029 (25 bp)
TTTGCCGAGTCGATGGTCAAGATGG
LOC_Os11g43980
Os.11563.1.S1_at--392--4852Chr11:26067078..26067102 (25 bp)
GCTACGTCATCAACTAATAATTAAT
LOC_Os11g43980
Os.11563.1.S1_at--220--3151Chr11:26067127..26067151 (25 bp)
AATTAAGCTCGTAATTATGTGTCTT
LOC_Os11g43980
Os.11563.1.S1_at--583--791Chr11:26067143..26067167 (25 bp)
ATGTGTCTTAATTTTTCCTGCTGAT
LOC_Os11g43980
Os.11563.1.S1_at--323--4751Chr11:26067162..26067186 (25 bp)
GCTGATTATTGATTAAGTGTTCCCT
LOC_Os11g43980
Os.11563.1.S1_at--659--3731Chr11:26067185..26067209 (25 bp)
CTAATTAATCATGCGTGTAACTGAT
LOC_Os11g43980
Os.11563.1.S1_at--107--6131Chr11:26067219..26067243 (25 bp)
GAGTGGTGGCGACATATCGATCTAT
LOC_Os11g43980
Os.11563.1.S1_at--615--9871Chr11:26067252..26067276 (25 bp)
TACTTGGATTACTTTGTTTGTTAAT
LOC_Os11g43980
Target Sequence 
GCCTTGGACCGGAGTTATCTAGCGCGGCTCCGGTCGCGGTGCGCCAGCCTCGCCGGCGACAACACGACGCTGGCGGAGAT
GGACCCCGGGAGCTTCCTCACCTTCGACGCCGGCTACTACCGGCTGGTGGCGAGGCGGCGGGGGCTCTTNCCACTCCGAC
TCGTCGCTGNTAGACGACGCGTTCNACCGCCGGCTANCGTGCGGCGGCAGGCCACCGGCATGTACGCCGCCGAGTTCTTC
NAGGGATTTTGCCGAGTCGATGGTCAAGATGGGCGGCGTCGGCGTGCTCACCGGCGGCGAAGGCGAGATCAGGAAGAAGT
GCTACGTCATCAACTAATAATTAATCTACGTATTATAGCTTAATTAAGCAATTAAGCTCGTAATTATGTGTCTTAATTTT
TCCTGCTGATTATTGATTAAGTGTTCCCTAATTAATCATGCGTGTAACTGATGTATGTGTAGAGTGGTGGCGACATATCG
ATCTATACTNGTTTTACTTGGATTACTTTGTTTGTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis