Browse Element(s) Details


OsAffx.8967.1.S1_x_at

Description gb:NM_193552.1
DB_XREF= gi:34914187
GEN=OSJNBb0049O23.5
TID=OsAffx.8967.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0049O23.5 (OSJNBb0049O23.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g383591/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38330NANA1+21832879..21835491retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38340OsAffx.15069.1.S1_at1/111+21841702..21847161retrotransposon protein, putative, unclassified
LOC_Os01g38340OsAffx.17577.1.S1_at1/111+21841702..21847161retrotransposon protein, putative, unclassified
LOC_Os01g38359Os.10310.1.S1_at11/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.10310.2.S1_at11/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.21209.1.S1_at9/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.17446.1.S1_at2/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.7398.1.S1_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.47760.1.S1_x_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.8967.1.S1_x_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.57395.1.S1_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38380OsAffx.23554.3.S1_s_at11/111+21882411..21883604hypothetical protein
LOC_Os01g38380OsAffx.23554.3.S1_at11/111+21882411..21883604hypothetical protein
LOC_Os01g38390OsAffx.23554.2.S1_s_at11/111+21884103..21884800hypothetical protein
LOC_Os01g38400OsAffx.26082.1.S1_at11/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38400OsAffx.26082.1.S1_x_at11/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38400OsAffx.16960.1.S1_at1/111+21897056..21897970retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8967.1.S1_x_at--484--511Chr01:21864182..21864206 (25 bp)
ATCGCTCCATAAACCTGCTTGTGGG
NONE
OsAffx.8967.1.S1_x_at--242--7491Chr01:21864162..21864186 (25 bp)
GTGGGAAAACATCCGCTTCATTCGT
NONE
OsAffx.8967.1.S1_x_at--983--2971Chr01:21864096..21864120 (25 bp)
AATGGGCACCATTAGAGGACCTCAT
NONE
OsAffx.8967.1.S1_x_at--241--10031Chr01:21864058..21864108 (25 bp)
TAGAGGACCTCATCGACCCTAAGCA
NONE
OsAffx.8967.1.S1_x_at--810--8771NONE
TGTTTCCCTCTATATCCCTAATTTG
NONE
OsAffx.8967.1.S1_x_at--753--7971Chr01:21863263..21863287 (25 bp)
GGATCCTCTGACTTTGGCTTGGAAA
NONE
OsAffx.8967.1.S1_x_at--410--2333Chr01:21862275..21862294 (20 bp)
AAAGTCACGGTGTTGCAGTTCGCTT
LOC_Os01g38359
OsAffx.8967.1.S1_x_at--837--6851Chr01:21863169..21863193 (25 bp)
GTTTGCTTGCATACTGTGCGATCCA
NONE
OsAffx.8967.1.S1_x_at--38--1211Chr01:21863145..21863169 (25 bp)
AGTTCGGCCCAAAATCACAGCACGG
NONE
OsAffx.8967.1.S1_x_at--873--5391Chr01:21861132..21861156 (25 bp)
GAAGCTTCAAGACACTCATGTTCCT
NONE
OsAffx.8967.1.S1_x_at--495--831Chr01:21861092..21861116 (25 bp)
ATGGATTACCTCACATGCAGCTAAG
NONE
Target Sequence 
ATCGCTCCATAAACCTGCTTGTGGGAAAACATCCGCTTCATTCGTCTCCAGTGCCGTCGGCCTCCCCCTCGACTCCATTA
AAATGGAATGGGCACCATTAGAGGACCTCATCGACCCTAAGCACGCCAAAAAACGACCTGTTTCCCTCTATATCCCTAAT
TTGGAAACGGATCCTCTGACTTTGGCTTGGAAAGTCACGGTGTTGCAGTTCGCTTCATCCCTGCCGACCACTACATCTAA
CGGCACACATCCATCTTCCCTCGTTTGCTTGCATACTGTGCGATCCAGTTCGGCCCAAAATCACAGCACGGCCGGCGTGG
AAAAAACAGGGGTGCAGCGGCAGAGACCACAGCAAACCGAAGCTTCAAGACACTCATGTTCCTACTCATACATGAAAAAT
GGATTACCTCACATGCAGCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8967.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis