Browse Element(s) Details


Os.10310.2.S1_at

Description gb:NM_193550.1
DB_XREF= gi:34914183
GEN=OSJNBb0049O23.3
TID=Os.10310.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptidylprolyl isomerase (OSJNBb0049O23.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0049O23.3 (OSJNBb0049O23.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3835911/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38330NANA1+21832879..21835491retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38340OsAffx.15069.1.S1_at1/111+21841702..21847161retrotransposon protein, putative, unclassified
LOC_Os01g38340OsAffx.17577.1.S1_at1/111+21841702..21847161retrotransposon protein, putative, unclassified
LOC_Os01g38359Os.10310.1.S1_at11/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.10310.2.S1_at11/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.21209.1.S1_at9/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.17446.1.S1_at2/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.7398.1.S1_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.47760.1.S1_x_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.8967.1.S1_x_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.57395.1.S1_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38380OsAffx.23554.3.S1_s_at11/111+21882411..21883604hypothetical protein
LOC_Os01g38380OsAffx.23554.3.S1_at11/111+21882411..21883604hypothetical protein
LOC_Os01g38390OsAffx.23554.2.S1_s_at11/111+21884103..21884800hypothetical protein
LOC_Os01g38400OsAffx.26082.1.S1_at11/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38400OsAffx.26082.1.S1_x_at11/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38400OsAffx.16960.1.S1_at1/111+21897056..21897970retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10310.2.S1_at--447--2771Chr01:21854012..21854035 (24 bp)
AAGACCACAGTCATTTTATTTGTTC
LOC_Os01g38359
Os.10310.2.S1_at--700--10411Chr01:21854026..21854050 (25 bp)
TTATTTGTTCCATCACTACTATAGA
LOC_Os01g38359
Os.10310.2.S1_at--799--6691Chr01:21854032..21854056 (25 bp)
GTTCCATCACTACTATAGACACTAT
LOC_Os01g38359
Os.10310.2.S1_at--580--10031Chr01:21854047..21854071 (25 bp)
TAGACACTATTTTTCCTGTGCGTTT
LOC_Os01g38359
Os.10310.2.S1_at--55--3331Chr01:21854051..21854075 (25 bp)
CACTATTTTTCCTGTGCGTTTGGGT
LOC_Os01g38359
Os.10310.2.S1_at--1008--10631Chr01:21854059..21854083 (25 bp)
TTCCTGTGCGTTTGGGTTTATTATC
LOC_Os01g38359
Os.10310.2.S1_at--1063--8691Chr01:21854063..21854087 (25 bp)
TGTGCGTTTGGGTTTATTATCTCGT
LOC_Os01g38359
Os.10310.2.S1_at--385--10411Chr01:21854076..21854100 (25 bp)
TTATTATCTCGTGCGGTGGATCGGC
LOC_Os01g38359
Os.10310.2.S1_at--912--10411Chr01:21854079..21854103 (25 bp)
TTATCTCGTGCGGTGGATCGGCCCG
LOC_Os01g38359
Os.10310.2.S1_at--53--7972Chr09:22492166..22492188 (22 bp)
GGATCGGCCCGCTTGCAGCGCCGTA
NONE
Os.10310.2.S1_at--312--4931Chr01:21854103..21854127 (25 bp)
GCTTGCAGCGCCGTATCTGGGAAAA
LOC_Os01g38359
Target Sequence 
AAGACCACAGTCATTTTATTTGTTCCATCACTACTATAGACACTATTTTTCCTGTGCGTTTGGGTTTATTATCTCGTGCG
GTGGATCGGCCCGCTTGCAGCGCCGTATCTGGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10310.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis