Browse Element(s) Details


Os.47760.1.S1_x_at

Description gb:AK071570.1
DB_XREF= gi:32981593
TID=Os.47760.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107F12, full insert sequence.
FL= gb:AK071570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0693011/11expressed protein
LOC_Os01g383591/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06910Os.26586.1.A1_at11/1112+3359719..3368216Nrap protein, expressed
LOC_Os12g06920OsAffx.31625.1.S1_at11/1112+3374472..3380285NB-ARC domain containing protein
LOC_Os12g06930Os.47760.1.S1_x_at11/1112+3382996..3384738expressed protein
LOC_Os12g06940OsAffx.24595.2.S1_x_at11/1112+3390049..3390500hypothetical protein
LOC_Os12g06940OsAffx.24595.2.S1_at11/1112+3390049..3390500hypothetical protein
LOC_Os12g06940OsAffx.24595.1.S1_s_at7/1112+3390049..3390500hypothetical protein
LOC_Os12g06950OsAffx.19526.1.S1_at11/1112+3392650..3392997hypothetical protein
LOC_Os12g06960OsAffx.7508.1.S1_at11/1112+3395128..3397423transposon protein, putative, unclassified
LOC_Os12g06960Os.29966.1.S1_at1/1112+3395128..3397423transposon protein, putative, unclassified
LOC_Os12g06960Os.29966.1.S1_x_at1/1112+3395128..3397423transposon protein, putative, unclassified
LOC_Os12g06970NANA12+3400895..3401314hypothetical protein
LOC_Os12g06980Os.14598.1.S1_at10/1112+3401730..3412835SAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47760.1.S1_x_at--368--5931Chr12:3383511..3383535 (25 bp)
GAGCATTGGTGCGTTAGTCGTAGAT
LOC_Os12g06930
Os.47760.1.S1_x_at--205--1551Chr12:3383510..3383534 (25 bp)
AGCATTGGTGCGTTAGTCGTAGATT
LOC_Os12g06930
Os.47760.1.S1_x_at--37--4951Chr12:3383509..3383533 (25 bp)
GCATTGGTGCGTTAGTCGTAGATTC
LOC_Os12g06930
Os.47760.1.S1_x_at--1000--3591Chr12:3383508..3383532 (25 bp)
CATTGGTGCGTTAGTCGTAGATTCG
LOC_Os12g06930
Os.47760.1.S1_x_at--667--31Chr12:3383507..3383531 (25 bp)
ATTGGTGCGTTAGTCGTAGATTCGC
LOC_Os12g06930
Os.47760.1.S1_x_at--892--10831Chr12:3383506..3383530 (25 bp)
TTGGTGCGTTAGTCGTAGATTCGCA
LOC_Os12g06930
Os.47760.1.S1_x_at--118--4011Chr12:3383500..3383524 (25 bp)
CGTTAGTCGTAGATTCGCAGGTGGT
LOC_Os12g06930
Os.47760.1.S1_x_at--242--3692Chr04:13036685..13036709 (25 bp)
CTTTGAGCCCCGACAGATGGCGGCG
NONE
Os.47760.1.S1_x_at--854--7714Chr05:1048396..1048417 (22 bp)
GGGTGTTCTTTTGGGCGATCTCATA
NONE
Os.47760.1.S1_x_at--1059--10831Chr12:3383197..3383221 (25 bp)
TTGGGCGATCTCATATGTGTTCCTT
LOC_Os12g06930
Os.47760.1.S1_x_at--585--8651Chr12:3383196..3383220 (25 bp)
TGGGCGATCTCATATGTGTTCCTTT
LOC_Os12g06930
Target Sequence 
GAGCATTGGTGCGTTAGTCGTAGATTCGCAGGTGGTGAACAGCGGGTGAAAACCCAGCCCGGCCATGGCCGGACCGACAA
CNATGGTTAATTCCCCTTCCTGAGGGCGTTGTNGTGCTGTCTCATCCCTCAAGGGTGGTTGCCTGGCGAAAGCCCAGTCC
TGACTCCTTTGAGCCCCGACAGATGGCGGCGGCGGTTTACCNGTCGCTTCTCTTCTTGAAGACATCGTTTTGGTATCCCC
TAGCCGAAGCNCTCTCGATCGATTGGTGCAAGCACACTCTAGGAGTTGGCTTTGTATTGGTTGTGAGGGTGTTCTTTTGG
GCGATCTCATATGTGTTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47760.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis