Browse Element(s) Details


Os.26586.1.A1_at

Description gb:AK068475.1
DB_XREF= gi:32978493
TID=Os.26586.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26586 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152H07, full insert sequence.
FL= gb:AK068475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0691011/11Nrap protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06860OsAffx.4416.1.S1_at1/1112+3334325..3335123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06870Os.10039.1.S1_at4/1112+3337354..3343209Nucleoporin autopeptidase family protein, expressed
LOC_Os12g06880OsAffx.31623.1.S1_at11/1112+3346355..3346828hypothetical protein
LOC_Os12g06890Os.10039.1.S1_at11/1112+3347757..3351994Nucleoporin autopeptidase family protein, expressed
LOC_Os12g06900OsAffx.31624.1.S1_at11/1112+3356303..3357874Citrate binding protein precursor, putative
LOC_Os12g06910Os.26586.1.A1_at11/1112+3359719..3368216Nrap protein, expressed
LOC_Os12g06920OsAffx.31625.1.S1_at11/1112+3374472..3380285NB-ARC domain containing protein
LOC_Os12g06930Os.47760.1.S1_x_at11/1112+3382996..3384738expressed protein
LOC_Os12g06940OsAffx.24595.2.S1_x_at11/1112+3390049..3390500hypothetical protein
LOC_Os12g06940OsAffx.24595.2.S1_at11/1112+3390049..3390500hypothetical protein
LOC_Os12g06940OsAffx.24595.1.S1_s_at7/1112+3390049..3390500hypothetical protein
LOC_Os12g06950OsAffx.19526.1.S1_at11/1112+3392650..3392997hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26586.1.A1_at--1141--4351Chr12:3367468..3367492 (25 bp)
CCACATACTTTCTGCGGGATTTGAA
LOC_Os12g06910
Os.26586.1.A1_at--174--7311Chr12:3367571..3367595 (25 bp)
GTGCATTTCCTAAAACTTTCAAGCT
LOC_Os12g06910
Os.26586.1.A1_at--255--1851Chr12:3367619..3367643 (25 bp)
ACGCAATCGGTCTTACATGGGAGAA
LOC_Os12g06910
Os.26586.1.A1_at--111--6231Chr12:3367806..3367830 (25 bp)
GAGGCCGATGAAACCATGCTGGATC
LOC_Os12g06910
Os.26586.1.A1_at--1131--6351Chr12:3367827..3367851 (25 bp)
GATCCAGCTTCTATCCTAAAGGAGG
LOC_Os12g06910
Os.26586.1.A1_at--299--8771Chr12:3367885..3367909 (25 bp)
TGTATCTCCTCAAAGCACCAAAGCT
LOC_Os12g06910
Os.26586.1.A1_at--329--6211Chr12:3367953..3367977 (25 bp)
GAGGCTTGTGCTGTTTGTGCAATTA
LOC_Os12g06910
Os.26586.1.A1_at--878--3731Chr12:3367987..3368011 (25 bp)
CTAACCGATATTCTTACACTGGCAA
LOC_Os12g06910
Os.26586.1.A1_at--521--1391Chr12:3368017..3368041 (25 bp)
AGACGGTGGTTTCCATGGCACTGAT
LOC_Os12g06910
Os.26586.1.A1_at--513--8591Chr12:3368048..3368072 (25 bp)
TGGTAAGGGATCAACATCTGGCAAT
LOC_Os12g06910
Os.26586.1.A1_at--768--7071Chr12:3368180..3368204 (25 bp)
GTAATTTTGATCCTTCCATCTGATG
LOC_Os12g06910
Target Sequence 
CCACATACTTTCTGCGGGATTTGAAGAGTGCATTTCCTAAAACTTTCAAGCTGTGGTATGATTCAATCGGAGGAGACGCA
ATCGGTCTTACATGGGAGAACTCAAAGAAGCGTGGCAGAGACGAGGCCGATGAAACCATGCTGGATCCAGCTTCTATCCT
AAAGGAGGTTGGAAATGTTGGCAAAGGTTTGGTAAGGGGCGTGTATCTCCTCAAAGCACCAAAGCTTCAGTAAACTATTG
AAAACTCGCTGAAAGTTGTGTGGAAGAGAGAGGCTTGTGCTGTTTGTGCAATTAACACAACTTCTAACCGATATTCTTAC
ACTGGCAAGAGCAAGACGGTGGTTTCCATGGCACTGATTGGACATGGTAAGGGATCAACATCTGGCAATGTACTGATTAG
AAGTAAGCAAGGAATGTTGTGTTTAGACTCAAGTTGATTAGGGTATAAAAGTTTGTATCCAAATTTTGATTCTGAGGTAC
AGAAAAGTATAGCAATGTAATTTTGATCCTTCCATCTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26586.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis