Browse Element(s) Details


OsAffx.31625.1.S1_at

Description tigr:9640.m00617
TID=OsAffx.31625.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0692011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06890Os.10039.1.S1_at11/1112+3347757..3351994Nucleoporin autopeptidase family protein, expressed
LOC_Os12g06900OsAffx.31624.1.S1_at11/1112+3356303..3357874Citrate binding protein precursor, putative
LOC_Os12g06910Os.26586.1.A1_at11/1112+3359719..3368216Nrap protein, expressed
LOC_Os12g06920OsAffx.31625.1.S1_at11/1112+3374472..3380285NB-ARC domain containing protein
LOC_Os12g06930Os.47760.1.S1_x_at11/1112+3382996..3384738expressed protein
LOC_Os12g06940OsAffx.24595.2.S1_x_at11/1112+3390049..3390500hypothetical protein
LOC_Os12g06940OsAffx.24595.2.S1_at11/1112+3390049..3390500hypothetical protein
LOC_Os12g06940OsAffx.24595.1.S1_s_at7/1112+3390049..3390500hypothetical protein
LOC_Os12g06950OsAffx.19526.1.S1_at11/1112+3392650..3392997hypothetical protein
LOC_Os12g06960OsAffx.7508.1.S1_at11/1112+3395128..3397423transposon protein, putative, unclassified
LOC_Os12g06960Os.29966.1.S1_at1/1112+3395128..3397423transposon protein, putative, unclassified
LOC_Os12g06960Os.29966.1.S1_x_at1/1112+3395128..3397423transposon protein, putative, unclassified
LOC_Os12g06970NANA12+3400895..3401314hypothetical protein
LOC_Os12g06980Os.14598.1.S1_at10/1112+3401730..3412835SAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31625.1.S1_at--219--1491Chr12:3379686..3379710 (25 bp)
AGCAAGATGTACTCCCTGCGATGGC
LOC_Os12g06920
OsAffx.31625.1.S1_at--432--7831Chr12:3379734..3379758 (25 bp)
GGTAAATGGCCTTTTGCTCCAATAA
LOC_Os12g06920
OsAffx.31625.1.S1_at--906--6971Chr12:3379802..3379826 (25 bp)
GTACCTTAGGATCTGTGGGCACATG
LOC_Os12g06920
OsAffx.31625.1.S1_at--84--6951Chr12:3379845..3379869 (25 bp)
GTAGAGTCACTCCATGATCTTGTTG
LOC_Os12g06920
OsAffx.31625.1.S1_at--786--5791Chr12:3379886..3379910 (25 bp)
GACGCACGTTGATGGTTTCCAACTA
LOC_Os12g06920
OsAffx.31625.1.S1_at--159--10691Chr12:3379902..3379926 (25 bp)
TTCCAACTATTCAACGTCCTCTGTA
LOC_Os12g06920
OsAffx.31625.1.S1_at--552--9991Chr12:3379997..3380021 (25 bp)
TAGCCAGCACTTTCGGGAGCTCAAG
LOC_Os12g06920
OsAffx.31625.1.S1_at--1031--2551Chr12:3380023..3380047 (25 bp)
AACTGATTCTGGGTTATACTCCTAG
LOC_Os12g06920
OsAffx.31625.1.S1_at--1109--8271Chr12:3380098..3380122 (25 bp)
GGCTAGTTGTGTATTTCGGCGACCA
LOC_Os12g06920
OsAffx.31625.1.S1_at--104--5831Chr12:3380200..3380224 (25 bp)
GACCTGTACTAGAGCCGGTAGAGCA
LOC_Os12g06920
OsAffx.31625.1.S1_at--258--9811Chr12:3380231..3380255 (25 bp)
TAACAAGCGAGACGTGTCCCAACGG
LOC_Os12g06920
Target Sequence 
AGCAAGATGTACTCCCTGCGATGGCTCGACATCGGCAATCTTGATGCCGGTAAATGGCCTTTTGCTCCAATAATGGAATT
TCTACATGATATAGAGCCACCACCACAACTGCTCCGGTACCTTAGGATCTGTGGGCACATGGACAGGTTGCCTGACTGGG
TAGAGTCACTCCATGATCTTGTTGAATTGCAGTTACGGTGGACGCACGTTGATGGTTTCCAACTATTCAACGTCCTCTGT
AAGTTGCCCAACCTGAAGAGGCTATTCCTGGGAATTTACTTTATTCACGGAAAACATATGGTTGTGCACAGTAGCCAGCA
CTTTCGGGAGCTCAAGGAACTGATTCTGGGTTATACTCCTAGTAGTTGTGATGTTTACGAATTTGAGGAAGGATCCATGC
CAAATGTGGAGAGGCTAGTTGTGTATTTCGGCGACCAAACTAAAAAAATTGTTGGCATTGAGCACTTCAAGAAACTTAAA
GAGGTTGAATATATTGGTTCGAAAGACAATTTGAGACCTGTACTAGAGCCGGTAGAGCAGATGAATAACAAGCGAGACGT
GTCCCAACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis