Browse Element(s) Details


Os.14598.1.S1_at

Description gb:AK059066.1
DB_XREF= gi:32969084
TID=Os.14598.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-G10, full insert sequence.
FL= gb:AK059066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0698010/11SAP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06920OsAffx.31625.1.S1_at11/1112+3374472..3380285NB-ARC domain containing protein
LOC_Os12g06930Os.47760.1.S1_x_at11/1112+3382996..3384738expressed protein
LOC_Os12g06940OsAffx.24595.2.S1_x_at11/1112+3390049..3390500hypothetical protein
LOC_Os12g06940OsAffx.24595.2.S1_at11/1112+3390049..3390500hypothetical protein
LOC_Os12g06940OsAffx.24595.1.S1_s_at7/1112+3390049..3390500hypothetical protein
LOC_Os12g06950OsAffx.19526.1.S1_at11/1112+3392650..3392997hypothetical protein
LOC_Os12g06960OsAffx.7508.1.S1_at11/1112+3395128..3397423transposon protein, putative, unclassified
LOC_Os12g06960Os.29966.1.S1_at1/1112+3395128..3397423transposon protein, putative, unclassified
LOC_Os12g06960Os.29966.1.S1_x_at1/1112+3395128..3397423transposon protein, putative, unclassified
LOC_Os12g06970NANA12+3400895..3401314hypothetical protein
LOC_Os12g06980Os.14598.1.S1_at10/1112+3401730..3412835SAP domain containing protein, expressed
LOC_Os12g06990NANA12+3418093..3418648hypothetical protein
LOC_Os12g07000NANA12+3426729..3427016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g07010Os.5507.1.S1_at11/1112+3428225..343077060S ribosomal protein L3, putative, expressed
LOC_Os12g07010Os.22696.2.S1_x_at2/1112+3428225..343077060S ribosomal protein L3, putative, expressed
LOC_Os12g07020Os.19306.1.S1_at10/1112+3430913..34362215-formyltetrahydrofolate cyclo-ligase family protein, putative, expressed
LOC_Os12g07030Os.54932.1.S1_at11/1112+3436393..3439087expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14598.1.S1_at--862--7631Chr12:3402300..3402324 (25 bp)
GGGAGAACACGCTTGCCATCAAAAC
LOC_Os12g06980
Os.14598.1.S1_at--738--7831Chr12:3402148..3402172 (25 bp)
GGTAAGCATTTAGGTTCAACGTCGA
LOC_Os12g06980
Os.14598.1.S1_at--597--7431Chr12:3402065..3402089 (25 bp)
GTGTTTGTTTCCACTGTGTGTGCTA
LOC_Os12g06980
Os.14598.1.S1_at--423--5471Chr12:3401980..3402004 (25 bp)
GAACTGACTCAGAAATCATCCGCAT
LOC_Os12g06980
Os.14598.1.S1_at--665--6291Chr12:3401955..3401979 (25 bp)
GATGATCTTTTTCCTTCTTTCTAGA
LOC_Os12g06980
Os.14598.1.S1_at--800--8471Chr12:3401851..3401875 (25 bp)
TGGCTGTGTGGTGCAAGCATTCCTT
LOC_Os12g06980
Os.14598.1.S1_at--26--4951Chr12:3401835..3401859 (25 bp)
GCATTCCTTTGTTTGTTACTCTGAG
LOC_Os12g06980
Os.14598.1.S1_at--126--771Chr12:3401803..3401827 (25 bp)
ATGTCTATGTCGCACTCTATATCTT
LOC_Os12g06980
Os.14598.1.S1_at--596--251Chr12:3401785..3401809 (25 bp)
ATATCTTGGTGCACCTTTCAGGTTG
LOC_Os12g06980
Os.14598.1.S1_at--294--751Chr12:3401752..3401776 (25 bp)
ATGTACGCTATCTCGAGTTACCTGA
LOC_Os12g06980
Os.14598.1.S1_at--1119--8931Chr12:3401730..3401754 (25 bp)
TGACTCCTGACTGCTGCAATTGCAT
NONE
Target Sequence 
GGGAGAACACGCTTGCCATCAAAACAGACCGGCCTGTGAAGCCGAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGG
CGACCGCTGCAGCCGATTGNGCAGAAGGCCTGAGGNGCCACTGAGGCANGCAACCGATGGTACATTGCTGTTCTTGGTAA
GCATTTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATATNATATCTGACAACAGANAGGAAATGNAACACGATATGG
TGTTTGTTTCCACTGTGTGTGCTANTCTGCTGTNCNAGTGACGAAGTGGCCGTGTGTGTTTTGGCTGTTTTATTGTTCCA
NAGAAGGAACTGACTCAGAAATCATCCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTGGTGTTGGG
TTTTTCTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTGGCTGTGTGGTGCAAGCATTCCTT
TGTTTGTTACTCTGAGAGTAACCATGTCTATGTCGCACTCTATATCTTGGTGCACCTTTCAGGTTGCAAGAATAATGTAC
GCTATCTCGAGTTACCTGACTCCTGACTGCTGCAATTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis