Browse Element(s) Details


Os.5507.1.S1_at

Description gb:D12630.1
DB_XREF= gi:303852
TID=Os.5507.1
CNT=68
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5507 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ribosomal protein L3, complete cds.
PROD=ribosomal protein L3
FL= gb:D12630.1 gb:AK060925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0701011/1160S ribosomal protein L3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06980Os.14598.1.S1_at10/1112+3401730..3412835SAP domain containing protein, expressed
LOC_Os12g06990NANA12+3418093..3418648hypothetical protein
LOC_Os12g07000NANA12+3426729..3427016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g07010Os.5507.1.S1_at11/1112+3428225..343077060S ribosomal protein L3, putative, expressed
LOC_Os12g07010Os.22696.2.S1_x_at2/1112+3428225..343077060S ribosomal protein L3, putative, expressed
LOC_Os12g07020Os.19306.1.S1_at10/1112+3430913..34362215-formyltetrahydrofolate cyclo-ligase family protein, putative, expressed
LOC_Os12g07030Os.54932.1.S1_at11/1112+3436393..3439087expressed protein
LOC_Os12g07039NANA12+3441236..3441570NA
LOC_Os12g07050Os.18523.1.S1_at10/1112+3449066..3453049Ssu72-like protein, expressed
LOC_Os12g07060Os.35805.1.S1_at11/1112+3454590..3462155DnaJ C terminal region family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0005842cellular_componentcytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5507.1.S1_at--710--8771Chr12:3430032..3430056 (25 bp)
TGTATTGGTGCCTGGCATCCAGCCA
LOC_Os12g07010
Os.5507.1.S1_at--908--571Chr12:3430048..3430072 (25 bp)
ATCCAGCCAGGGTGTCCTACACTGT
LOC_Os12g07010
Os.5507.1.S1_at--676--2171Chr12:3430066..3430090 (25 bp)
ACACTGTTGCCCGTGCTGGTCAGAA
LOC_Os12g07010
Os.5507.1.S1_at--764--1151Chr12:3430141..3430165 (25 bp)
AGTCTGGTCAGGAGTCTCATGCGGC
LOC_Os12g07010
Os.5507.1.S1_at--517--5091Chr12:3430168..3430284 (25 bp)
GCACCGAGTTCGACAGGACTGAGAA
LOC_Os12g07010
Os.5507.1.S1_at--512--371Chr12:3430346..3430370 (25 bp)
ATCAAGGGTTGCTGCGTCGGTCCGA
LOC_Os12g07010
Os.5507.1.S1_at--859--5211Chr12:3430542..3430566 (25 bp)
GAATTCAATCGAACCTCACCTGATA
LOC_Os12g07010
Os.5507.1.S1_at--570--291Chr12:3430564..3430588 (25 bp)
ATAGCTTTCCCAGTTTCTGTACTTG
LOC_Os12g07010
Os.5507.1.S1_at--148--8271Chr12:3430602..3430626 (25 bp)
GGCAGATATTTTGAGTACCCAGTTT
LOC_Os12g07010
Os.5507.1.S1_at--71--6091Chr12:3430614..3430638 (25 bp)
GAGTACCCAGTTTAAATGCTTTGCT
LOC_Os12g07010
Os.5507.1.S1_at--165--4891Chr12:3430631..3430655 (25 bp)
GCTTTGCTACTCTGAGCTGCTGGTG
LOC_Os12g07010
Target Sequence 
TGTATTGGTGCCTGGCATCCAGCCAGGGTGTCCTACACTGTTGCCCGTGCTGGTCAGAACGGATACCACCACCGCACTGA
GATGAACAAGAAGGTTTACAAGATTGGCAAGTCTGGTCAGGAGTCTCATGCGGCCTGCACCGAGTTCGACAGGACTGAGA
AGGACATCACCCCGATGGGCGGCTTCCCGCACTACGGTGTGGTGAAGGGCGACTACCTCATGATCAAGGGTTGCTGCGTC
GGTCCGAAGAAGAGAGTCGTCACCCTCCGCCAGTCGCTGCTGAAGCAGACCTCGCGGCTCGCCCTGGAGGAGATCAAGCT
CAAGTTCATCGACACCTCGTCCAAGTTCGGGCACGGTCGCTTCCAGACCACCGACGAGAAGCAGAGGTTCTTCGGCAAGC
TCAAGGCCTAGGCCATCAGAATTCAATCGAACCTCACCTGATAGCTTTCCCAGTTTCTGTACTTGTCCTGAGTTTTGTGG
CAGATATTTTGAGTACCCAGTTTAAATGCTTTGCTACTCTGAGCTGCTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis