Browse Element(s) Details


Os.35805.1.S1_at

Description gb:AK065706.1
DB_XREF= gi:32975724
TID=Os.35805.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038P03, full insert sequence.
FL= gb:AK065706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0706011/11DnaJ C terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07010Os.5507.1.S1_at11/1112+3428225..343077060S ribosomal protein L3, putative, expressed
LOC_Os12g07010Os.22696.2.S1_x_at2/1112+3428225..343077060S ribosomal protein L3, putative, expressed
LOC_Os12g07020Os.19306.1.S1_at10/1112+3430913..34362215-formyltetrahydrofolate cyclo-ligase family protein, putative, expressed
LOC_Os12g07030Os.54932.1.S1_at11/1112+3436393..3439087expressed protein
LOC_Os12g07039NANA12+3441236..3441570NA
LOC_Os12g07050Os.18523.1.S1_at10/1112+3449066..3453049Ssu72-like protein, expressed
LOC_Os12g07060Os.35805.1.S1_at11/1112+3454590..3462155DnaJ C terminal region family protein, expressed
LOC_Os12g07070OsAffx.7509.1.S1_at11/1112+3465452..3466346hypothetical protein
LOC_Os12g07080NANA12+3469214..3471197transposon protein, putative, Mutator sub-class
LOC_Os12g07090Os.7307.3.S1_x_at2/1112+3472805..3473531retrotransposon protein, putative, unclassified
LOC_Os12g07100OsAffx.31628.1.S1_at11/1112+3478314..3481494hypothetical protein
LOC_Os12g07110Os.15600.1.S1_a_at11/1112+3482903..3488186AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000740biological_processnuclear membrane fusion
GO:0006457biological_processprotein folding
GO:0009553biological_processfemale gametophyte development
GO:0009558biological_processcellularization of megagametophyte
GO:0010197biological_processpolar nuclei fusion
GO:0010198biological_processsynergid death
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35805.1.S1_at--976--2631Chr12:3460882..3460906 (25 bp)
AACCATGTGCATGTTGACGCTATTA
LOC_Os12g07060
Os.35805.1.S1_at--613--2711Chr12:3460908..3461129 (25 bp)
AAGCATTGCCCAGGCTGTACTAGGT
LOC_Os12g07060
Os.35805.1.S1_at--848--5131Chr12:3461158..3461276 (25 bp)
GCAACGTTTCAGTCAAGGTTCGCCA
LOC_Os12g07060
Os.35805.1.S1_at--601--10611Chr12:3461270..3461294 (25 bp)
TTCGCCAAGGTACCCAACCAGGAGA
LOC_Os12g07060
Os.35805.1.S1_at--19--351Chr12:3461477..3461501 (25 bp)
ATAAAAGCACGGAATTCCCCAGCCT
LOC_Os12g07060
Os.35805.1.S1_at--512--6871Chr12:3461512..3461536 (25 bp)
GTATATTCACTTCAACGTCCGAGTT
LOC_Os12g07060
Os.35805.1.S1_at--868--771Chr12:3461651..3461675 (25 bp)
ATGTGACACAACGACAACGCGAGTT
LOC_Os12g07060
Os.35805.1.S1_at--753--1591Chr12:3461724..3461748 (25 bp)
AGCTGCCTCCGGATGAAATTTTGCC
LOC_Os12g07060
Os.35805.1.S1_at--564--2251Chr12:3461739..3461763 (25 bp)
AAATTTTGCCGCACCCATTCGTTGG
LOC_Os12g07060
Os.35805.1.S1_at--1064--2971Chr12:3461804..3461828 (25 bp)
AATGGGCTCGGTATGACGTACATGA
LOC_Os12g07060
Os.35805.1.S1_at--169--6271Chr12:3461972..3461996 (25 bp)
GATGTGTAATGCCTTAGCTGCCGCA
LOC_Os12g07060
Target Sequence 
AACCATGTGCATGTTGACGCTATTATAAGCATTGCCCAGGCTGTACTAGGTGGAACTGTCACAGTACCAACCCTTACGGG
CAACGTTTCAGTCAAGGTTCGCCAAGGTACCCAACCAGGAGAAAAGGTTGTCNTCAGGGGCAAAGGAATAAAAGCACGGA
ATTCCCCAGCCTATGGGAATCAGTATATTCACTTCAACGTCCGAGTTCCAACGGATGTGACACAACGACAACGCGAGTTA
ATGGAGGAATTTGATAAAGAGGAGTGCAACGAAGGGGAGAGAGTTGCAGCTGCCTCCGGATGAAATTTTGCCGCACCCAT
TCGTTGGTTATTATACGTAATAAGCCGATNGCCGAAGCCCCAATTATAATGGGCTCGGTATGACGTACATGATGTAGTCT
TTAGAGTGCAGATTTTGCATTGTATAATATGCACGCTAAGGCTAAATAACTGTACTANCCTTTTGACCTTTTATTTATTG
TTATGGCAAATGTAACAGNTAATATAACTAGGAACATATAATAGGAAGGCTATGTGATGTGTAATGCCTTAGCTGCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis