Browse Element(s) Details


Os.15600.1.S1_a_at

Description gb:AK065708.1
DB_XREF= gi:32975726
TID=Os.15600.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013042P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041H23, full insert sequence.
FL= gb:AK065708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0711011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07060Os.35805.1.S1_at11/1112+3454590..3462155DnaJ C terminal region family protein, expressed
LOC_Os12g07070OsAffx.7509.1.S1_at11/1112+3465452..3466346hypothetical protein
LOC_Os12g07080NANA12+3469214..3471197transposon protein, putative, Mutator sub-class
LOC_Os12g07090Os.7307.3.S1_x_at2/1112+3472805..3473531retrotransposon protein, putative, unclassified
LOC_Os12g07100OsAffx.31628.1.S1_at11/1112+3478314..3481494hypothetical protein
LOC_Os12g07110Os.15600.1.S1_a_at11/1112+3482903..3488186AMP-binding enzyme family protein, expressed
LOC_Os12g07120Os.52612.1.S1_s_at11/1112+3494956..3496683GATA zinc finger family protein, expressed
LOC_Os12g07140Os.26948.1.S1_at11/1112+3498499..3501238expressed protein
LOC_Os12g07150Os.20118.1.A1_s_at11/1112+3502115..3508255Amidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004467molecular_functionlong-chain-fatty-acid-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15600.1.S1_a_at--526--3851Chr12:3487398..3487422 (25 bp)
CTGATCCTTTCCACAGTTACTGTGT
LOC_Os12g07110
Os.15600.1.S1_a_at--1081--1951Chr12:3487416..3487440 (25 bp)
ACTGTGTTGCACTTGTGGTAGCTGC
LOC_Os12g07110
Os.15600.1.S1_a_at--727--8291Chr12:3487462..3487486 (25 bp)
GGCTTCGCAGCAGGGAGTTACATAC
LOC_Os12g07110
Os.15600.1.S1_a_at--165--1791Chr12:3487487..3487511 (25 bp)
ACCGATTTCGTAGATTTGTGCCAGA
LOC_Os12g07110
Os.15600.1.S1_a_at--464--5331Chr12:3487529..3487553 (25 bp)
GAAGTGCTTGGATCTCTATCAAAGG
LOC_Os12g07110
Os.15600.1.S1_a_at--170--551Chr12:3487758..3487782 (25 bp)
ATCCCGGCCAAGATCAAGCTGATAT
LOC_Os12g07110
Os.15600.1.S1_a_at--483--8831Chr12:3487777..3487801 (25 bp)
TGATATCTGAGCCATGGACCCCGGA
LOC_Os12g07110
Os.15600.1.S1_a_at--183--6431Chr12:3487866..3487890 (25 bp)
GATCTTGCTAAACTATACGCCTGAT
LOC_Os12g07110
Os.15600.1.S1_a_at--936--9791Chr12:3487912..3487936 (25 bp)
TAAGCCTACTCGACGTTTTGACACA
LOC_Os12g07110
Os.15600.1.S1_a_at--410--10351Chr12:3487927..3487951 (25 bp)
TTTTGACACAACCAGCTACCGTAGG
LOC_Os12g07110
Os.15600.1.S1_a_at--910--3711Chr12:3487942..3487966 (25 bp)
CTACCGTAGGACAGAGCTCTTGTGA
LOC_Os12g07110
Target Sequence 
CTGATCCTTTCCACAGTTACTGTGTTGCACTTGTGGTAGCTGCACACAATGAGCTGGAAAACTGGGCTTCGCAGCAGGGA
GTTACATACACCGATTTCGTAGATTTGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGGCTGC
GAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAGCTGATATCTGAGCCATGGACCCCGGAGTCTGGCC
TTGTCACTGCTGCCCTCAAGCTCAAGAGGGAAGTGCTCAGGAAGACATATGAGGATGATCTTGCTAAACTATACGCCTGA
TGATCAATGCTGAATTGCTGATTAAGCCTACTCGACGTTTTGACACAACCAGCTACCGTAGGACAGAGCTCTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15600.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis