Browse Element(s) Details


Os.52612.1.S1_s_at

Description gb:AK068306.1
DB_XREF= gi:32978324
TID=Os.52612.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136H07, full insert sequence.
FL= gb:AK068306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0712011/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07080NANA12+3469214..3471197transposon protein, putative, Mutator sub-class
LOC_Os12g07090Os.7307.3.S1_x_at2/1112+3472805..3473531retrotransposon protein, putative, unclassified
LOC_Os12g07100OsAffx.31628.1.S1_at11/1112+3478314..3481494hypothetical protein
LOC_Os12g07110Os.15600.1.S1_a_at11/1112+3482903..3488186AMP-binding enzyme family protein, expressed
LOC_Os12g07120Os.52612.1.S1_s_at11/1112+3494956..3496683GATA zinc finger family protein, expressed
LOC_Os12g07140Os.26948.1.S1_at11/1112+3498499..3501238expressed protein
LOC_Os12g07150Os.20118.1.A1_s_at11/1112+3502115..3508255Amidase family protein, expressed
LOC_Os12g07160Os.24613.1.S1_at11/1112+3513880..3520715Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52612.1.S1_s_at--464--1691Chr12:3496278..3496302 (25 bp)
AGCCAATCCCCGACGAGCAAAAAGA
LOC_Os12g07120
Os.52612.1.S1_s_at--668--5511Chr12:3496517..3496541 (25 bp)
GAAAAACAGTTTTACCACCTGACAT
LOC_Os12g07120
Os.52612.1.S1_s_at--1058--3431Chr12:3496523..3496547 (25 bp)
CAGTTTTACCACCTGACATTGTGAA
LOC_Os12g07120
Os.52612.1.S1_s_at--573--2071Chr12:3496538..3496562 (25 bp)
ACATTGTGAATACTCGTCGATCCTG
LOC_Os12g07120
Os.52612.1.S1_s_at--1094--3051Chr12:3496568..3496592 (25 bp)
AATCTTTGCGTGAAATTTAGCTAGT
LOC_Os12g07120
Os.52612.1.S1_s_at--58--191Chr12:3496582..3496606 (25 bp)
ATTTAGCTAGTTTTGCTGCCCAGAT
LOC_Os12g07120
Os.52612.1.S1_s_at--627--10271Chr12:3496593..3496617 (25 bp)
TTTGCTGCCCAGATGAACTAGTTCT
LOC_Os12g07120
Os.52612.1.S1_s_at--644--5471Chr12:3496607..3496631 (25 bp)
GAACTAGTTCTGGTGCTTGGTAGCT
LOC_Os12g07120
Os.52612.1.S1_s_at--511--1231Chr12:3496612..3496636 (25 bp)
AGTTCTGGTGCTTGGTAGCTGATGA
LOC_Os12g07120
Os.52612.1.S1_s_at--394--9991Chr12:3496627..3496651 (25 bp)
TAGCTGATGAAGTTGAAACCGGTTT
LOC_Os12g07120
Os.52612.1.S1_s_at--1053--8951Chr12:3496640..3496664 (25 bp)
TGAAACCGGTTTTAATGGATCAAGG
LOC_Os12g07120
Target Sequence 
AGCCAATCCCCGACGAGCAAAAAGAAGAGGTGGTAAGCGTGCCAGTCGCCGCCGCCGCGCCCGCCACCGACGGCGGCGCG
GCGAGCTCGCTGGACGCGCTGCTGCTCGACGGGCCGTCGGCGCCGCTCATCGTGGACGGCGACGATTTCTTGGTTAGTTA
GGTAGCCAGAAAAAAAAAAAGAGGAATAATTTCAGCTGAGAATGAGATGAGGAATACCAATTTTTCGTTTGATTTTTCAG
GAAAAACAGTTTTACCACCTGACATTGTGAATACTCGTCGATCCTGGGGAAAATCTTTGCGTGAAATTTAGCTAGTTTTG
CTGCCCAGATGAACTAGTTCTGGTGCTTGGTAGCTGATGAAGTTGAAACCGGTTTTAATGGATCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52612.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis