Browse Element(s) Details


OsAffx.31628.1.S1_at

Description tigr:9640.m00635
TID=OsAffx.31628.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0710011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07060Os.35805.1.S1_at11/1112+3454590..3462155DnaJ C terminal region family protein, expressed
LOC_Os12g07070OsAffx.7509.1.S1_at11/1112+3465452..3466346hypothetical protein
LOC_Os12g07080NANA12+3469214..3471197transposon protein, putative, Mutator sub-class
LOC_Os12g07090Os.7307.3.S1_x_at2/1112+3472805..3473531retrotransposon protein, putative, unclassified
LOC_Os12g07100OsAffx.31628.1.S1_at11/1112+3478314..3481494hypothetical protein
LOC_Os12g07110Os.15600.1.S1_a_at11/1112+3482903..3488186AMP-binding enzyme family protein, expressed
LOC_Os12g07120Os.52612.1.S1_s_at11/1112+3494956..3496683GATA zinc finger family protein, expressed
LOC_Os12g07140Os.26948.1.S1_at11/1112+3498499..3501238expressed protein
LOC_Os12g07150Os.20118.1.A1_s_at11/1112+3502115..3508255Amidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31628.1.S1_at--482--5751Chr12:3478858..3478882 (25 bp)
GACGGACCAAGCACCTGACACGGGA
LOC_Os12g07100
OsAffx.31628.1.S1_at--182--10511Chr12:3478808..3478832 (25 bp)
TTCAAGTCTAGCTCTGGGCGGCTCA
LOC_Os12g07100
OsAffx.31628.1.S1_at--421--2371Chr12:3478716..3478740 (25 bp)
AAACCTCACTGACCAGATCCTTGTG
LOC_Os12g07100
OsAffx.31628.1.S1_at--603--3371Chr12:3478625..3478649 (25 bp)
CACCATAACAGGCTCGTGGCGAGGA
LOC_Os12g07100
OsAffx.31628.1.S1_at--937--4051Chr12:3478606..3478630 (25 bp)
CGAGGAGGCTGTTCAACTACTGCGC
LOC_Os12g07100
OsAffx.31628.1.S1_at--651--9911Chr12:3478589..3478613 (25 bp)
TACTGCGCCTACTTGGTGGCATTCG
LOC_Os12g07100
OsAffx.31628.1.S1_at--668--91Chr12:3478569..3478593 (25 bp)
ATTCGTGCCAGAGATGCTCCCGGAC
LOC_Os12g07100
OsAffx.31628.1.S1_at--13--4571Chr12:3478499..3478523 (25 bp)
GCGCGGGACCACTTCGACGGATGTA
LOC_Os12g07100
OsAffx.31628.1.S1_at--140--9111Chr12:3478459..3478483 (25 bp)
TGCTCGCGAGGCTACAGGAGATCCA
LOC_Os12g07100
OsAffx.31628.1.S1_at--435--7291Chr12:3478417..3478441 (25 bp)
GTGCCCGCGTCCGAGAGACAAGTCA
LOC_Os12g07100
OsAffx.31628.1.S1_at--570--9451Chr12:3478362..3478386 (25 bp)
TCGGCGGCCAGCTCAGGATGGCTAT
LOC_Os12g07100
Target Sequence 
GACGGACCAAGCACCTGACACGGGAGGTCAGCGGAGCCGTGCTCCTCTCCTTCAAGTCTAGCTCTGGGCGGCTCACCAAT
GGCATCTCCACCTTGCGAAGGCACGGCCTGTCGTCTCGGCTGGGGTGGGCGTGCACTTTCCCAAACCTCACTGACCAGAT
CCTTGTGTGGCACGTCGTCACCACGCGCTGCGACTGGGCGAGTGGCCGTGGCCGTAGCCGCCGCGACGACGACCACCATA
ACAGGCTCGTGGCGAGGAGGCTGTTCAACTACTGCGCCTACTTGGTGGCATTCGTGCCAGAGATGCTCCCGGACCCGAGC
TACATCGCCCAGCAGATCTTCGACACGACGGTGCAGCAAGCGCGGGACCACTTCGACGGATGTAGGACGACGAGCTCCGT
GCTCGCGAGGCTACAGGAGATCCAAGACAAGGAGAGATGCGGTGCCCGCGTCCGAGAGACAAGTCAGCTCCACCATCATC
GAGAAGGCGGCGCTGCTCGGCGGCCAGCTCAGGATGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis