Browse Element(s) Details


Os.24613.1.S1_at

Description gb:AK067565.1
DB_XREF= gi:32977583
TID=Os.24613.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112J12, full insert sequence.
FL= gb:AK067565.1 gb:AK060289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0716011/11Viral A-type inclusion protein repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07120Os.52612.1.S1_s_at11/1112+3494956..3496683GATA zinc finger family protein, expressed
LOC_Os12g07140Os.26948.1.S1_at11/1112+3498499..3501238expressed protein
LOC_Os12g07150Os.20118.1.A1_s_at11/1112+3502115..3508255Amidase family protein, expressed
LOC_Os12g07160Os.24613.1.S1_at11/1112+3513880..3520715Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os12g07170OsAffx.24099.1.S1_x_at1/1112+3522302..3524423transposon protein, putative, Pong sub-class
LOC_Os12g07180Os.26430.1.A1_at9/1112+3524545..3526563expressed protein
LOC_Os12g07190Os.21230.1.S1_at11/1112+3530358..3535425CBS domain-containing protein, putative, expressed
LOC_Os12g07200NANA12+3537613..3538138hypothetical protein
LOC_Os12g07210Os.5725.1.S1_at1/1112+3541704..3543482Fructose-bisphosphate aldolase class-I family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24613.1.S1_at--423--5971Chr12:3514404..3514428 (25 bp)
GAGAAATGCCGCTCGATTTTAGAAA
LOC_Os12g07160
Os.24613.1.S1_at--766--9211Chr12:3514328..3514352 (25 bp)
TCCAAAGGTCAACAGCAGCTGCTTT
LOC_Os12g07160
Os.24613.1.S1_at--117--10651Chr12:3514277..3514301 (25 bp)
TTCGCCACCTTCAGAAATGTCAGTA
LOC_Os12g07160
Os.24613.1.S1_at--1061--9811Chr12:3514165..3514189 (25 bp)
TAACAGTTCATGGATGCTCTCATCT
LOC_Os12g07160
Os.24613.1.S1_at--426--6571Chr12:3514102..3514126 (25 bp)
GATTCTGTGTGCTGAATTCCGTTCC
LOC_Os12g07160
Os.24613.1.S1_at--874--91Chr12:3514087..3514111 (25 bp)
ATTCCGTTCCAGCAAGCTCAGTTTT
LOC_Os12g07160
Os.24613.1.S1_at--450--10371Chr12:3514063..3514087 (25 bp)
TTTTTTCACAGCCTTCTTGATGAGA
LOC_Os12g07160
Os.24613.1.S1_at--176--411Chr12:3514028..3514052 (25 bp)
ATCAGTGTTGGCTGTTTTGGTGCCA
LOC_Os12g07160
Os.24613.1.S1_at--854--7291Chr12:3513923..3513947 (25 bp)
GTGCGGCTTATACTTGCTGTGTGAA
LOC_Os12g07160
Os.24613.1.S1_at--567--7351Chr12:3513903..3513927 (25 bp)
GTGAATTGTGATCTCCATATTACCA
LOC_Os12g07160
Os.24613.1.S1_at--194--10471Chr12:3513884..3513908 (25 bp)
TTACCAATCATACTTATTCTGCCTG
LOC_Os12g07160
Target Sequence 
GAGAAATGCCGCTCGATTTTAGAAATAGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCA
AAGGTCAACAGCAGCTGCTTTTNGCCGTTACCGTCGATCCAGCCCTNTTCGCCACCTTCAGAAATGTCAGTATTTGCAGG
GGGCCTGTCTTCNCTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAAAGAGCTGGTGAAAACAAACTGTCCAGATGCTACT
AACAGTTCATGGATGCTCTCATCTGTAGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATT
CCGTTCCAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTGGCTGTTTTGGTGCC
AGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACTGCAGAAGTGCAGATACATTGTGGTGTATTTGTGT
TGTGCGGCTTATACTTGCTGTGTGAATTGTGATCTCCATATTACCAATCATACTTATTCTGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis