Browse Element(s) Details


Os.26430.1.A1_at

Description gb:CB677460
DB_XREF= gi:29681185
DB_XREF=OSJNEe14G16.r
CLONE=OSJNEe14G16
TID=Os.26430.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26430 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173848.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1269011/11expressed protein
LOC_Os12g071809/11expressed protein
LOC_Os12g359105/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12640OsAffx.19634.1.S1_at10/1112+6964506..6966110hypothetical protein
LOC_Os12g12640OsAffx.20040.1.S1_x_at1/1112+6964506..6966110hypothetical protein
LOC_Os12g12650Os.46184.1.A1_at1/1112+6970547..6976644hypothetical protein
LOC_Os12g12650OsAffx.12703.1.S1_at1/1112+6970547..6976644hypothetical protein
LOC_Os12g12664Os.53960.1.S1_at11/1112+6975799..6980990expressed protein
LOC_Os12g12664Os.50231.1.S1_x_at10/1112+6975799..6980990expressed protein
LOC_Os12g12680OsAffx.24099.1.S1_x_at1/1112+6980808..6983825transposon protein, putative, Pong sub-class
LOC_Os12g12690Os.26430.1.A1_at11/1112+6983900..6985966expressed protein
LOC_Os12g12700NANA12+6996744..7002779retrotransposon protein, putative, unclassified
LOC_Os12g12710NANA12+7003544..7006810transposon protein, putative, unclassified
LOC_Os12g12720OsAffx.19635.1.S1_at11/1112+7010135..7011399jasmonate-induced protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26430.1.A1_at--329--8833Chr12:21848732..21848756 (25 bp)
TGATTCTCCTGCGATATCTACTCCT
LOC_Os12g35910
Os.26430.1.A1_at--1119--433Chr12:21848717..21848741 (25 bp)
ATCTACTCCTGCATGTAATGTTGAT
LOC_Os12g35910
Os.26430.1.A1_at--1077--272Chr12:6984397..6984421 (25 bp)
ATAGGGCTGCTGATCCTGAGAATAC
LOC_Os12g12690
Os.26430.1.A1_at--561--2471Chr12:6984331..6984355 (25 bp)
AACAGATGCGCGAACGCTCGGATCT
LOC_Os12g12690
Os.26430.1.A1_at--269--5453Chr12:21848611..21848635 (25 bp)
GAACGCTCGGATCTATCACGGAAAG
LOC_Os12g35910
Os.26430.1.A1_at--927--6093Chr12:21848587..21848611 (25 bp)
GAGTCCTTAGACTATCTATGGGATA
LOC_Os12g35910
Os.26430.1.A1_at--60--6032Chr12:6984230..6984254 (25 bp)
GAGAGGTACCAAATTGCTTTTGCAC
LOC_Os12g12690
Os.26430.1.A1_at--793--8113Chr12:21848424..21848448 (25 bp)
GGACTGATACTAGTGCAATGAGCAT
LOC_Os12g35910
Os.26430.1.A1_at--415--7153Chr12:21848328..21848352 (25 bp)
GTCTTATTACTCATCAATTAGCATT
NONE
Os.26430.1.A1_at--580--9893Chr12:21848250..21848274 (25 bp)
TACTATCTTGTTTTGGTACTGTTTT
NONE
Os.26430.1.A1_at--823--6993Chr12:21848235..21848259 (25 bp)
GTACTGTTTTATGTAGCCGGAGCAT
NONE
Target Sequence 
TGATTCTCCTGCGATATCTACTCCTGCATGTAATGTTGATGAGAATAGGGCTGCTGATCCTGAGAATACAGTAGGTGAGG
GAAGACCCATGGGGAGGAAGAAGGCGAAACAACAGATGCGCGAACGCTCGGATCTATCACGGAAAGAGTCCTTAGACTAT
CTATGGGATAAGAAGAAAGAGGCCGATGCGGAGAAGGAGCGAAAGTTTGAGGAGAGGTACCAAATTGCTTTTGCACTTGA
GCAAAAGCGGATTGATTTGGAGAGAGACAAGTTCGAGTTCAAGAGAATGACAAAAGAAGATAAGCTTTTGAGGACTGATA
CTAGTGCAATGAGCATCGAGGAGCAGGAGTACTATAAAAATGTGAAGAATCAAATTNTAAGTCGTCGTTCAGCTCAAGCA
TAAATTAGTCTTATTACTCATCAATTAGCATTCAAAATTTGTTAGATCTTTAGCTATAGAGTCTACTTAATGGACTAGTA
AATTTTACTATCTTGTTTTGGTACTGTTTTATGTAGCCGGAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26430.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis