Browse Element(s) Details


OsAffx.24099.1.S1_x_at

Description tigr:9630.m00379
TID=OsAffx.24099.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to kinase binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0465011/11expressed protein
LOC_Os08g222301/11transposon protein, putative, Pong sub-class
LOC_Os12g126801/11transposon protein, putative, Pong sub-class
LOC_Os12g071701/11transposon protein, putative, Pong sub-class
LOC_Os12g359001/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04600Os.9332.2.S1_x_at1/112+2059024..2060523transposon protein, putative, unclassified
LOC_Os02g04610Os.53281.1.S1_s_at11/112+2064263..2065735expressed protein
LOC_Os02g04610Os.53281.1.S1_at11/112+2064263..2065735expressed protein
LOC_Os02g04620OsAffx.2507.1.S1_at11/112+2065874..2066200hypothetical protein
LOC_Os02g04630OsAffx.11891.1.S1_at11/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04630Os.5811.1.S1_at1/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04640Os.52219.1.A1_at11/112+2075496..2079149myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g04650OsAffx.24099.1.S1_x_at11/112+2082561..2085271expressed protein
LOC_Os02g04650Os.6162.1.S1_at11/112+2082561..2085271expressed protein
LOC_Os02g04660Os.17772.1.S1_at10/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04660OsAffx.4369.1.S1_at1/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04670Os.5742.1.S2_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.5742.1.S1_a_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.56065.1.S1_s_at1/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04680OsAffx.11893.1.S1_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04680OsAffx.11893.1.S1_s_at11/112+2106371..2110538SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24099.1.S1_x_at--972--4791Chr02:2084863..2084885 (23 bp)
GCTCGGCTCCGTGTGGAATCAGGCT
LOC_Os02g04650
OsAffx.24099.1.S1_x_at--821--5431Chr02:2083777..2083801 (25 bp)
GAACCTCAATTCATGGGCTAACAGT
LOC_Os02g04650
OsAffx.24099.1.S1_x_at--29--2996Chr12:3522962..3523341 (25 bp)
AATGTTGGGTTCTTTAGATTCGCTA
LOC_Os12g07170
OsAffx.24099.1.S1_x_at--939--6571Chr02:2083467..2083491 (25 bp)
GATTCGCTAGAATTCCCTACAGGGA
LOC_Os02g04650
OsAffx.24099.1.S1_x_at--657--4411Chr02:2083268..2083292 (25 bp)
GCCTTTCTAGTCACCGTTCGTAATA
LOC_Os02g04650
OsAffx.24099.1.S1_x_at--47--2311Chr02:2083070..2083094 (25 bp)
AAAGGCCATCTGGACATTCCTGAGT
LOC_Os02g04650
OsAffx.24099.1.S1_x_at--1079--71Chr02:2083055..2083079 (25 bp)
ATTCCTGAGTTTTCTTTCGGTGAGC
LOC_Os02g04650
OsAffx.24099.1.S1_x_at--705--6811Chr02:2082910..2082934 (25 bp)
GTTTACCGATGACAAGGGCCTCGCA
LOC_Os02g04650
OsAffx.24099.1.S1_x_at--20--1091Chr02:2082896..2082920 (25 bp)
AGGGCCTCGCATCCGACGACAAGAG
LOC_Os02g04650
OsAffx.24099.1.S1_x_at--265--10151Chr02:2082835..2082859 (25 bp)
TATCCGGGAGAAACTGCGCGCATTC
LOC_Os02g04650
OsAffx.24099.1.S1_x_at--602--11Chr02:2082649..2082673 (25 bp)
CTTAAGGTCCCATATTTTTCGCAAT
LOC_Os02g04650
Target Sequence 
GCTCGGCTCCGTGTGGAATCAGGCTGGAACCTGGGAGGAAAAGAACCTCAATTCATGGGCTAACAGTAGGATAAAGGAAA
TGTTGGGTTCTTTAGATTCGCTAGAATTCCCTACAGGGAAGGCATCTCTTGATGGAGTGTCTAAATGCATTGGTGATGCC
TTTCTAGTCACCGTTCGTAATAAGAAGAGAGTAGGGTATACCTATGAACTAAGCTTGAAATTTAAGGGTGAATGGTTAAT
TAAAGAAGAAAAGATGAAGGTCAAAGGCCATCTGGACATTCCTGAGTTTTCTTTCGGTGAGCTGGAGGACTTGGAGGTAG
AAGTAAGGTTTACCGATGACAAGGGCCTCGCATCCGACGACAAGAGGCAGATTTGCAAGGACCTCAAGTCCTTCCTTTCA
CCTATCCGGGAGAAACTGCGCGCATTCGAAGAAGAGCTCAAGGATAGATCACTTAAGGTCCCATATTTTTCGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24099.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis