Browse Element(s) Details


OsAffx.2507.1.S1_at

Description tigr:9630.m00375
TID=OsAffx.2507.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0462011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04570OsAffx.2506.1.S1_at11/112+2041370..2044121hypothetical protein
LOC_Os02g04580NANA2+2047914..2048255retrotransposon protein, putative, unclassified
LOC_Os02g04590OsAffx.11889.1.S1_at10/112+2052178..2055331Auxin-independent growth promoter, putative
LOC_Os02g04590OsAffx.11889.1.S1_x_at10/112+2052178..2055331Auxin-independent growth promoter, putative
LOC_Os02g04600Os.9332.2.S1_x_at1/112+2059024..2060523transposon protein, putative, unclassified
LOC_Os02g04610Os.53281.1.S1_s_at11/112+2064263..2065735expressed protein
LOC_Os02g04610Os.53281.1.S1_at11/112+2064263..2065735expressed protein
LOC_Os02g04620OsAffx.2507.1.S1_at11/112+2065874..2066200hypothetical protein
LOC_Os02g04630OsAffx.11891.1.S1_at11/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04630Os.5811.1.S1_at1/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04640Os.52219.1.A1_at11/112+2075496..2079149myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g04650OsAffx.24099.1.S1_x_at11/112+2082561..2085271expressed protein
LOC_Os02g04650Os.6162.1.S1_at11/112+2082561..2085271expressed protein
LOC_Os02g04660Os.17772.1.S1_at10/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04660OsAffx.4369.1.S1_at1/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2507.1.S1_at--853--631Chr02:2066115..2066139 (25 bp)
ATGAAACTGAAGATCCTTTTGCGGA
LOC_Os02g04620
OsAffx.2507.1.S1_at--227--2391Chr02:2066112..2066136 (25 bp)
AAACTGAAGATCCTTTTGCGGAAGA
LOC_Os02g04620
OsAffx.2507.1.S1_at--459--3951Chr02:2066094..2066118 (25 bp)
CGGAAGAATTGGATAATCTTGTGCT
LOC_Os02g04620
OsAffx.2507.1.S1_at--421--431Chr02:2066079..2066103 (25 bp)
ATCTTGTGCTTAACATCATAACTCG
LOC_Os02g04620
OsAffx.2507.1.S1_at--680--7311Chr02:2066074..2066098 (25 bp)
GTGCTTAACATCATAACTCGCAAGT
LOC_Os02g04620
OsAffx.2507.1.S1_at--986--1991Chr02:2066059..2066083 (25 bp)
ACTCGCAAGTGCAATAGCTCAGTAG
LOC_Os02g04620
OsAffx.2507.1.S1_at--1161--1151Chr02:2066044..2066068 (25 bp)
AGCTCAGTAGCACAATTAAATAGGG
LOC_Os02g04620
OsAffx.2507.1.S1_at--585--2231Chr02:2066027..2066051 (25 bp)
AAATAGGGAACAATTTGCAGAGAAT
LOC_Os02g04620
OsAffx.2507.1.S1_at--138--9051Chr02:2065919..2066036 (25 bp)
TGCAGAGAATAAGGACTCGCGTTAT
LOC_Os02g04620
OsAffx.2507.1.S1_at--832--651Chr02:2065908..2065932 (25 bp)
AGGACTCGCGTTATAAGAAACGTCA
LOC_Os02g04620
OsAffx.2507.1.S1_at--826--3771Chr02:2065904..2065928 (25 bp)
CTCGCGTTATAAGAAACGTCAGCAA
LOC_Os02g04620
Target Sequence 
ATGAAACTGAAGATCCTTTTGCGGAAGAATTGGATAATCTTGTGCTTAACATCATAACTCGCAAGTGCAATAGCTCAGTA
GCACAATTAAATAGGGAACAATTTGCAGAGAATAAGGACTCGCGTTATAAGAAACGTCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis