Browse Element(s) Details


Os.52219.1.A1_at

Description gb:AK065704.1
DB_XREF= gi:32975722
TID=Os.52219.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013037C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037C19, full insert sequence.
FL= gb:AK065704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0464011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04590OsAffx.11889.1.S1_at10/112+2052178..2055331Auxin-independent growth promoter, putative
LOC_Os02g04590OsAffx.11889.1.S1_x_at10/112+2052178..2055331Auxin-independent growth promoter, putative
LOC_Os02g04600Os.9332.2.S1_x_at1/112+2059024..2060523transposon protein, putative, unclassified
LOC_Os02g04610Os.53281.1.S1_s_at11/112+2064263..2065735expressed protein
LOC_Os02g04610Os.53281.1.S1_at11/112+2064263..2065735expressed protein
LOC_Os02g04620OsAffx.2507.1.S1_at11/112+2065874..2066200hypothetical protein
LOC_Os02g04630OsAffx.11891.1.S1_at11/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04630Os.5811.1.S1_at1/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04640Os.52219.1.A1_at11/112+2075496..2079149myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g04650OsAffx.24099.1.S1_x_at11/112+2082561..2085271expressed protein
LOC_Os02g04650Os.6162.1.S1_at11/112+2082561..2085271expressed protein
LOC_Os02g04660Os.17772.1.S1_at10/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04660OsAffx.4369.1.S1_at1/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04670Os.5742.1.S2_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.5742.1.S1_a_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.56065.1.S1_s_at1/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52219.1.A1_at--941--131Chr02:2076130..2076154 (25 bp)
ATTACAGCTGCGCATAGAGGAACAC
LOC_Os02g04640
Os.52219.1.A1_at--859--5251Chr02:2076060..2076084 (25 bp)
GAATCCATATCCTCAATGACTAGTA
LOC_Os02g04640
Os.52219.1.A1_at--1155--5951Chr02:2076026..2076050 (25 bp)
GAGAATCTCCTGAATTCGCACCGAT
LOC_Os02g04640
Os.52219.1.A1_at--770--2631Chr02:2075977..2076001 (25 bp)
AACCTCTTCAGCACCTTTGTCAAAG
LOC_Os02g04640
Os.52219.1.A1_at--113--1691Chr02:2075894..2075918 (25 bp)
AGCCTCAGGCTGATCTTGAAATGGT
LOC_Os02g04640
Os.52219.1.A1_at--616--791Chr02:2075854..2075878 (25 bp)
ATGGTCGCAACCTTTTACAATATAG
LOC_Os02g04640
Os.52219.1.A1_at--52--6871Chr02:2075814..2075838 (25 bp)
GTTTGTTTTATTCTGATGTGCCTCC
LOC_Os02g04640
Os.52219.1.A1_at--896--771Chr02:2075799..2075823 (25 bp)
ATGTGCCTCCATGAGTTAGTGCAGA
LOC_Os02g04640
Os.52219.1.A1_at--108--7811Chr02:2075770..2075794 (25 bp)
GGTCTTTGCGATTTTATGGTATACT
LOC_Os02g04640
Os.52219.1.A1_at--321--6031Chr02:2075686..2075710 (25 bp)
GAGATGGTGCCATTGGTTCCCTGTA
LOC_Os02g04640
Os.52219.1.A1_at--261--7911Chr02:2075672..2075696 (25 bp)
GGTTCCCTGTATACTTTATTTCACT
LOC_Os02g04640
Target Sequence 
ATTACAGCTGCGCATAGAGGAACACGCAAGATATTTGCAGAAGATATTGGAAGAACAACAGAAAGCAAGAGAATCCATAT
CCTCAATGACTAGTACAACAGAAGGAGAATCTCCTGAATTCGCACCGATGGAGAAAACCGAGGACAAAGCAGAAACCTCT
TCAGCACCTTTGTCAAAGTGTAGAATTACAGATACTGATGCAGAATGCCATTCAAAAGTTGATAATAAAAAGACAAAGCC
TCAGGCTGATCTTGAAATGGTGCATGACGAATAATCATGGTCGCAACCTTTTACAATATAGTGCTTGGACTTGTATGTTT
GTTTTATTCTGATGTGCCTCCATGAGTTAGTGCAGAAATTGGTCTTTGCGATTTTATGGTATACTTTTTTGAAGACTTTT
TTTTTGTATATATTACTAACTCAGATGAAAATGGAGCCAGTAAAGAGATGGTGCCATTGGTTCCCTGTATACTTTATTTC
ACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52219.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis