Browse Element(s) Details


Os.5742.1.S2_at

Description gb:AK111384.1
DB_XREF= gi:32996593
TID=Os.5742.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B10, full insert sequence.
FL= gb:AK111384.1 gb:AK101322.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0467011/11Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04630OsAffx.11891.1.S1_at11/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04630Os.5811.1.S1_at1/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04640Os.52219.1.A1_at11/112+2075496..2079149myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g04650OsAffx.24099.1.S1_x_at11/112+2082561..2085271expressed protein
LOC_Os02g04650Os.6162.1.S1_at11/112+2082561..2085271expressed protein
LOC_Os02g04660Os.17772.1.S1_at10/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04660OsAffx.4369.1.S1_at1/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04670Os.5742.1.S2_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.5742.1.S1_a_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.56065.1.S1_s_at1/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04680OsAffx.11893.1.S1_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04680OsAffx.11893.1.S1_s_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04690Os.17826.1.A1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_x_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690OsAffx.29895.1.S1_at1/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04700Os.50456.1.A1_a_at11/112+2124896..2128690Aspartyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5742.1.S2_at--883--6572Chr02:2100863..2100887 (25 bp)
GATTCTGCATTTTCTGCTCCAATAC
LOC_Os02g04670
Os.5742.1.S2_at--658--10011Chr02:2100906..2100930 (25 bp)
TAGCTATGACCACTCAGATCAGATG
LOC_Os02g04670
Os.5742.1.S2_at--1110--3051Chr02:2100954..2100978 (25 bp)
AATCTCTCCAAATTTACCAGGGCAG
LOC_Os02g04670
Os.5742.1.S2_at--781--6891Chr02:2100995..2101019 (25 bp)
GTATACTAAGCTGCATCGATCCCTG
LOC_Os02g04670
Os.5742.1.S2_at--832--511Chr02:2101009..2101033 (25 bp)
ATCGATCCCTGCACACTGCATATCA
LOC_Os02g04670
Os.5742.1.S2_at--1012--5551Chr02:2101041..2101065 (25 bp)
GAAACCACACTACTGATCTGAAGCA
LOC_Os02g04670
Os.5742.1.S2_at--883--6551Chr02:2101085..2101109 (25 bp)
GATTACCTCGATTGATTTTAGCTGA
LOC_Os02g04670
Os.5742.1.S2_at--351--2831Chr02:2101124..2101148 (25 bp)
AAGTTCAGAGAAAGCTCGCCGCAGC
LOC_Os02g04670
Os.5742.1.S2_at--492--8432Chr02:2101153..2101177 (25 bp)
GGCCTCTCAGAACTGCATCTCCAAT
LOC_Os02g04670
Os.5742.1.S2_at--751--5591Chr02:2101182..2101206 (25 bp)
GACAACGGCCAAGCGGTTGGAGCCT
LOC_Os02g04670
Os.5742.1.S2_at--629--7051Chr02:2101384..2101408 (25 bp)
GTAACTCGATCTTAGATTCCCATCC
LOC_Os02g04670
Target Sequence 
GATTCTGCATTTTCTGCTCCAATACTTCAGAAGAGAGGTTATATAGCTATGACCACTCAGATCAGATGGCAATGGCGTCA
AAAAAAAAAAAAATCTCTCCAAATTTACCAGGGCAGAATCAACAAAATGTGAGTATACTAAGCTGCATCGATCCCTGCAC
ACTGCATATCAGAAGTCAGAAACCACACTACTGATCTGAAGCAAACAATTCGAGAGGTTCTTGATTACCTCGATTGATTT
TAGCTGATATCAGGATGAGAAAAGTTCAGAGAAAGCTCGCCGCAGCCTGCGGCCTCTCAGAACTGCATCTCCAATCCCCG
ACAACGGCCAAGCGGTTGGAGCCTCCGTCTCCGGCATGCGATCCGCGCGAAATCTCACCCTCCGTCGCGGCCTGACGAAC
CCTGCTCCGATCCCCTCCCAGGTTCGCCGGAGCTCCGCCGCCTCGTCGGGGGATCGGAGAGCGAGAAACCGAGAAGGAGC
CTAATTACAAACATGGAAATGAGAGGGATTTTTATGTAAATGTAACTCGATCTTAGATTCCCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5742.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis