Browse Element(s) Details


Os.50456.1.A1_a_at

Description gb:AK107052.1
DB_XREF= gi:32992261
TID=Os.50456.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-D03, full insert sequence.
FL= gb:AK107052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0470011/11Aspartyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04670Os.5742.1.S2_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.5742.1.S1_a_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.56065.1.S1_s_at1/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04680OsAffx.11893.1.S1_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04680OsAffx.11893.1.S1_s_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04690Os.17826.1.A1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_x_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690OsAffx.29895.1.S1_at1/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04700Os.50456.1.A1_a_at11/112+2124896..2128690Aspartyl-tRNA synthetase, putative, expressed
LOC_Os02g04710Os.2342.1.S1_at10/112+2128415..2137095Cycloartenol synthase, putative, expressed
LOC_Os02g04720NANA2+2140691..2141328hypothetical protein
LOC_Os02g04730Os.20295.1.S1_at10/112+2148478..2153358Cycloartenol synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006422biological_processaspartyl-tRNA aminoacylation
GO:0005737cellular_componentcytoplasm
GO:0004815molecular_functionaspartate-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50456.1.A1_a_at--843--6071Chr02:2127341..2127365 (25 bp)
GAGTATGACGAAGGCATCCGGATGC
LOC_Os02g04700
Os.50456.1.A1_a_at--957--3891Chr02:2127612..2127636 (25 bp)
CTGGGCGAGCTGGTTCATACCAAGT
LOC_Os02g04700
Os.50456.1.A1_a_at--1085--8951Chr02:2127915..2127939 (25 bp)
TGACACTGATTTCTACATGCTCTGC
LOC_Os02g04700
Os.50456.1.A1_a_at--787--8831Chr02:2127921..2127945 (25 bp)
TGATTTCTACATGCTCTGCCGGTAC
LOC_Os02g04700
Os.50456.1.A1_a_at--1062--9851Chr02:2127997..2128021 (25 bp)
TACAGCAACTCCTTCGACGTGTTCG
LOC_Os02g04700
Os.50456.1.A1_a_at--99--9031Chr02:2128171..2128195 (25 bp)
TGCACGTCCCGGAGGTCCTGGCACG
LOC_Os02g04700
Os.50456.1.A1_a_at--537--4451Chr02:2128321..2128345 (25 bp)
GCCTCGGCAACATCAGGAAGGCTTC
LOC_Os02g04700
Os.50456.1.A1_a_at--242--411Chr02:2128332..2128356 (25 bp)
ATCAGGAAGGCTTCTCTCTTCCCAC
LOC_Os02g04700
Os.50456.1.A1_a_at--655--3471Chr02:2128364..2128388 (25 bp)
CAGGAGGCTGAACCCCTGAAAACAA
LOC_Os02g04700
Os.50456.1.A1_a_at--799--2631Chr02:2128416..2128440 (25 bp)
AACCAACTGGTTTCTTTCATGTTTG
LOC_Os02g04700
Os.50456.1.A1_a_at--837--9131Chr02:2128446..2128470 (25 bp)
TGCGTGGCAAGAATTCTATCTGAAC
LOC_Os02g04700
Target Sequence 
GAGTATGACGAAGGCATCCGGATGCTCAAGGAAGCTGGGGTCCACGTGGAGGCCATGGGAGACCTCAACACAGAGTCTGA
GAAGAAGCTGGGCGAGCTGGTTCATACCAAGTATGACACTGATTTCTACATGCTCTGCCGGTACCCGTCGGCGGTGAGGC
CATTNTACACCATGCCCTGNTCCGACGACCCACGCTACAGCAACTCCTTCGACGTGTTCGTCCGAGGGGAGGAGATCATC
TCGGGAGCGCAGAGGGTGCACGTCCCGGAGGTCCTGGCACGACAGGCGGAGGAGCGGGGGATCGACGTCGGCAGCATCGC
CGCCTACGTCGACGCGTTCAGGTACGGCGCGCCGCCGCACGGCGGGTTCGGCGTCGGGCTGGAGAGGGTGGTGATGCTCT
TCTGCGGCCTCGGCAACATCAGGAAGGCTTCTCTCTTCCCACGCGACCCCAGGAGGCTGAACCCCTGAAAACAAAAAAAC
ACAACCAACTATCCACCCCAAAACCAACTGGTTTCTTTCATGTTTGTATTTTGCGTGGCAAGAATTCTATCTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50456.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis